View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_11 (Length: 512)
Name: NF11885_low_11
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 3702755 - 3703212
Alignment:
| Q |
1 |
agagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtatttt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702755 |
agagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaacttataagattaagaactttgtgttatttgttgtatttt |
3702854 |
T |
|
| Q |
101 |
gatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttattta----cataatgttgaagtggctttgtataagataagatgta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
3702855 |
gatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttatttacataatgttgatgtggctttgtataagataagatgta |
3702954 |
T |
|
| Q |
197 |
tggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaa-ttgcaacattcttttgtttcatgtattatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
3702955 |
tggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaaattgcaacattcttttctttcatgtattatt |
3703054 |
T |
|
| Q |
296 |
ttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaataatacttgttatcaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3703055 |
ttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttcttaataatacttcttatcaa |
3703154 |
T |
|
| Q |
396 |
gatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacacacaa |
453 |
Q |
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| T |
3703155 |
gatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacatacaa |
3703212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3699067 - 3699231
Alignment:
| Q |
1 |
agagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgtatttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
3699067 |
agagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaactcataagattaagaactttgtgtaatttgttgtatttt |
3699166 |
T |
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| Q |
101 |
gatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttacataatgttg |
169 |
Q |
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| T |
3699167 |
gatcattgttttatgcatctctgagaacatgattttcttttttgc----tgtttatttacataatgttg |
3699231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 3699346 - 3699475
Alignment:
| Q |
236 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagtt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| || |
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| T |
3699346 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaatt |
3699445 |
T |
|
| Q |
336 |
gatatagttaagttacatcagtattttaaa |
365 |
Q |
| |
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||||||||| |||||||||| | ||||||| |
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|
| T |
3699446 |
gatatagttcagttacatcattgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 3699251 - 3699283
Alignment:
| Q |
165 |
tgttgaagtggctttgtataagataagatgtat |
197 |
Q |
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|
| T |
3699251 |
tgttgaagtggctttgtataagataagatgtat |
3699283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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