View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_12 (Length: 511)

Name: NF11885_low_12
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_12
NF11885_low_12
[»] chr8 (12 HSPs)
chr8 (186-495)||(26796135-26796444)
chr8 (21-141)||(26796496-26796617)
chr8 (72-130)||(7430886-7430944)
chr8 (65-130)||(43950357-43950422)
chr8 (57-130)||(1226540-1226614)
chr8 (57-116)||(11335391-11335450)
chr8 (62-112)||(3382917-3382967)
chr8 (57-129)||(29802679-29802751)
chr8 (63-110)||(12514364-12514411)
chr8 (63-106)||(35584149-35584192)
chr8 (63-116)||(4155832-4155885)
chr8 (77-110)||(34882036-34882069)
[»] chr7 (5 HSPs)
chr7 (281-496)||(44179923-44180138)
chr7 (63-130)||(5887883-5887950)
chr7 (57-130)||(4131654-4131727)
chr7 (88-132)||(22109182-22109226)
chr7 (88-132)||(40582427-40582471)
[»] chr4 (11 HSPs)
chr4 (57-130)||(4701085-4701158)
chr4 (65-106)||(2711493-2711534)
chr4 (60-107)||(15528011-15528057)
chr4 (44-110)||(35755206-35755273)
chr4 (75-105)||(25678488-25678518)
chr4 (72-138)||(40481962-40482028)
chr4 (56-106)||(42154853-42154903)
chr4 (63-112)||(10152083-10152132)
chr4 (57-130)||(38721375-38721448)
chr4 (72-117)||(53801037-53801082)
chr4 (57-129)||(56297854-56297926)
[»] chr1 (7 HSPs)
chr1 (60-130)||(38644149-38644219)
chr1 (63-130)||(8980717-8980784)
chr1 (63-110)||(15443419-15443466)
chr1 (66-108)||(40711078-40711120)
chr1 (57-130)||(44647864-44647937)
chr1 (73-129)||(1191183-1191239)
chr1 (62-110)||(48896961-48897009)
[»] scaffold0085 (1 HSPs)
scaffold0085 (69-130)||(43749-43810)
[»] chr6 (4 HSPs)
chr6 (64-116)||(25012327-25012379)
chr6 (60-112)||(3686945-3686997)
chr6 (57-116)||(19240757-19240816)
chr6 (66-116)||(3535378-3535428)
[»] chr2 (10 HSPs)
chr2 (72-112)||(33227714-33227754)
chr2 (73-110)||(15771055-15771092)
chr2 (70-110)||(5096298-5096338)
chr2 (57-129)||(45001838-45001910)
chr2 (91-130)||(1381287-1381326)
chr2 (62-125)||(24252003-24252066)
chr2 (72-110)||(11384018-11384056)
chr2 (68-109)||(31975507-31975548)
chr2 (70-110)||(11277601-11277641)
chr2 (82-130)||(14802924-14802972)
[»] chr3 (14 HSPs)
chr3 (81-132)||(21894333-21894384)
chr3 (85-132)||(9776563-9776610)
chr3 (65-116)||(27634679-27634730)
chr3 (63-130)||(30057343-30057410)
chr3 (85-130)||(9794238-9794283)
chr3 (65-110)||(30080708-30080753)
chr3 (65-106)||(30681950-30681991)
chr3 (65-110)||(34519584-34519629)
chr3 (63-116)||(36373345-36373398)
chr3 (57-130)||(40414959-40415032)
chr3 (56-116)||(39946319-39946379)
chr3 (65-125)||(41751566-41751626)
chr3 (44-103)||(48143941-48144001)
chr3 (65-109)||(49431493-49431537)
[»] chr5 (11 HSPs)
chr5 (73-112)||(4701170-4701209)
chr5 (67-130)||(6500183-6500246)
chr5 (73-108)||(17407327-17407362)
chr5 (60-130)||(6175080-6175150)
chr5 (62-112)||(33053645-33053695)
chr5 (65-130)||(32017259-32017324)
chr5 (57-130)||(34278723-34278796)
chr5 (89-130)||(43165777-43165818)
chr5 (62-94)||(19342819-19342851)
chr5 (56-112)||(34038054-34038110)
chr5 (72-116)||(37303851-37303895)
[»] scaffold0246 (1 HSPs)
scaffold0246 (72-138)||(19901-19967)
[»] scaffold0196 (1 HSPs)
scaffold0196 (70-126)||(26283-26339)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 186 - 495
Target Start/End: Complemental strand, 26796444 - 26796135
Alignment:
Q  186 cataatataatggttttaaggcacatgaatgtaacatatattattttttggtgtatagatatggttgtcgagctatccatatgtgtcctgatattccttt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26796444 cataatataatggttttaaggcacatgaatgtaacatatattattttttggtgtatagatatggttgttgagctatccatatgtgtcctgatattccttt 26796345  T
Q  286 tcatggttcaacgacttggaactgataaagtgggttacagttttgctcctattatgtgtttgtggttcaccatgattggaggcattggtttgtacaattc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26796344 tcatggttcaacgacttggaactgataaagtgggttacagttttgctcctattatgtgtctgtggttcaccatgattggaggcattggtttgtacaattc 26796245  T
Q  386 aatcaagtatgatccaacagtgctgaaagcattaaatccaaaatacatagtagaatattttatcaggaacaagaaagatgcctggatttctcttggtggc 485  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26796244 aatcaagtatgatccaacagtgttgaaagcattaaatccaaaatacatagtagaatattttatcaggaacaagaaagatgcctggatttctcttggtggg 26796145  T
Q  486 gttgtgatgt 495  Q
    ||||||||||    
T  26796144 gttgtgatgt 26796135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 26796617 - 26796496
Alignment:
Q  21 tattccctctctcccaaaatggttgacctaatt-gacatgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaagg 119  Q
    ||||||||||||||||||||||||  |||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26796617 tattccctctctcccaaaatggttttcctagtttgacatgtatattatttacataatatattttgatcatatttttctattaatatataaaaacaaaagg 26796518  T
Q  120 tagcatataagttctataaatg 141  Q
    ||||||||||||||||| ||||    
T  26796517 tagcatataagttctattaatg 26796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 7430886 - 7430944
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||  ||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  7430886 ataacatacattgatcatagttttctattaatatataaatacaaatggtagcatataag 7430944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 43950422 - 43950357
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||||||||| ||||| || ||||||||| ||||||||| | ||||| |||||||||||||    
T  43950422 tattcacataacatactttgaccaaatttttctactaatatatatagacaaatggtagcatataag 43950357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 1226540 - 1226614
Alignment:
Q  57 atgtatattattcacataacatattttga--tcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||| |||||||||||| ||||||  || |||||||||| ||||||||||||||||||  |||||||||||    
T  1226540 atgtatattgttcacataacatgttttgagatc-tatttttctactaatatataaaaacaaaaaatagcatataag 1226614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 11335450 - 11335391
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    |||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  11335450 atgtgtattattcacataacatactttgaccatatttttctactaatatacaaagacaaa 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 3382967 - 3382917
Alignment:
Q  62 tattattcacataacatattttgatcatatttttctattaatatataaaaa 112  Q
    ||||| |||||||||||| ||||||||||||||| ||||| ||||||||||    
T  3382967 tattactcacataacatactttgatcatatttttttattattatataaaaa 3382917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 29802751 - 29802679
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataa 129  Q
    |||| ||||||||| |||| || |||||| |||||||||||| ||||||| ||| ||||  ||||||||||||    
T  29802751 atgtgtattattcatataatatgttttgaccatatttttctactaatatacaaagacaagtggtagcatataa 29802679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 12514364 - 12514411
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    |||||||| |||||||||||| |||||||||||||| | |||||||||    
T  12514364 attattcatataacatattttaatcatatttttctagtgatatataaa 12514411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 35584192 - 35584149
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatata 106  Q
    |||||| || ||| ||||||||||||||||||||||||||||||    
T  35584192 attattgacctaatatattttgatcatatttttctattaatata 35584149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 4155832 - 4155885
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    |||||| | |||| |||||||||| |||||||| ||||| ||||||||||||||    
T  4155832 attatttatataatatattttgattatatttttttattattatataaaaacaaa 4155885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 34882036 - 34882069
Alignment:
Q  77 atattttgatcatatttttctattaatatataaa 110  Q
    |||||||||||||||||||||| |||||||||||    
T  34882036 atattttgatcatatttttctactaatatataaa 34882069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 281 - 496
Target Start/End: Complemental strand, 44180138 - 44179923
Alignment:
Q  281 ccttttcatggttcaacgacttggaactgataaagtgggttacagttttgctcctattatgtgtttgtggttcaccatgattggaggcattggtttgtac 380  Q
    |||||||||||||||  |  |||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||||  | |||||||| |||||  | |||    
T  44180138 ccttttcatggttcagaggtttggaactgacaaagtgggttacagttttgctcccattatttgtatatggttcacattcattggaggtattggcatctac 44180039  T
Q  381 aattcaatcaagtatgatccaacagtgctgaaagcattaaatccaaaatacatagtagaatattttatcaggaacaagaaagatgcctggatttctcttg 480  Q
    ||||  |||| | ||||| || ||||  | |||||| |||||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||    
T  44180038 aatttcatcacgcatgatgcatcagttataaaagcaataaatccaaaatacatagtagattatttcatcaggaataaaaaagatgcttggatttctcttg 44179939  T
Q  481 gtggcgttgtgatgtc 496  Q
    |||| |||||| ||||    
T  44179938 gtggtgttgtgttgtc 44179923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 5887883 - 5887950
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||| | || ||||||||    
T  5887883 attatttacacaacatattttgatcatatttttctactaatatacaaagacaaatgatatcatataag 5887950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 4131727 - 4131654
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||| |||||||||||| || ||| | |||||||||  | ||||||||||| ||||||| |||||| ||||    
T  4131727 atgtatactattcacataacttactttaaccatattttttaactaatatataaatacaaaagttagcatgtaag 4131654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 22109226 - 22109182
Alignment:
Q  88 atatttttctattaatatataaaaacaaaaggtagcatataagtt 132  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  22109226 atatttttctactaatatatataaataaatggtagcatataagtt 22109182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 40582471 - 40582427
Alignment:
Q  88 atatttttctattaatatataaaaacaaaaggtagcatataagtt 132  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  40582471 atatttttctactaatatatataaataaatggtagcatataagtt 40582427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 4701158 - 4701085
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||| | ||| ||||| |||||||    
T  4701158 atgtacattattcatataacatgttttgatcatatttttctattaatatacaaagataaacggtagtatataag 4701085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 2711534 - 2711493
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatata 106  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  2711534 tattcacataatatattttgaccatatttttctattaatata 2711493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 15528057 - 15528011
Alignment:
Q  60 tatattattcacataacatattttgatcatatttttctattaatatat 107  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  15528057 tatattattcatataacatattt-gatcatgtttttctattaatatat 15528011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 35755206 - 35755273
Alignment:
Q  44 tgacctaattgaca-tgtatattattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    |||||||||||||| | || |||||| || | ||||||||||||||||||||| || |||||||||||    
T  35755206 tgacctaattgacaatttacattattgacctgacatattttgatcatatttttatactaatatataaa 35755273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 25678518 - 25678488
Alignment:
Q  75 acatattttgatcatatttttctattaatat 105  Q
    |||||||||||||||||||||||||||||||    
T  25678518 acatattttgatcatatttttctattaatat 25678488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 40481962 - 40482028
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataagttctataa 138  Q
    |||| ||| |||||||||||| || || || ||||||||||||||  |||||||||||||| |||||    
T  40481962 ataagatactttgatcatattcttttactattatataaaaacaaattgtagcatataagttttataa 40482028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 42154853 - 42154903
Alignment:
Q  56 catgtatattattcacataacatattttgatcatatttttctattaatata 106  Q
    |||||| | |||| || |||||||||||||||||||||||||| |||||||    
T  42154853 catgtagactatttacgtaacatattttgatcatatttttctactaatata 42154903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 10152083 - 10152132
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaa 112  Q
    ||||||||| |||||||||||||| ||||||||||| ||  |||||||||    
T  10152083 attattcacctaacatattttgattatatttttctactatcatataaaaa 10152132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 38721375 - 38721448
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| |||||||||||| || ||||||||||||||||||  |  |||||||||| ||||| | |||||| ||||    
T  38721375 atgtgtattattcacatgacttattttgatcatattttttaacaaatatataaatacaaatgttagcatgtaag 38721448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 53801037 - 53801082
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaacaaaa 117  Q
    ||||||||||||||||||||||||||| ||  ||||||||| ||||    
T  53801037 ataacatattttgatcatatttttctaatacaatataaaaaaaaaa 53801082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 56297926 - 56297854
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataa 129  Q
    ||||| |||||||||||||| | |||||| ||||||| |  | ||||||||||| ||||| | ||||||||||    
T  56297926 atgtacattattcacataacttgttttgaccatatttattaactaatatataaatacaaatgttagcatataa 56297854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 38644149 - 38644219
Alignment:
Q  60 tatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||||   ||||||||||||||||||||||||||||| |||||||| | ||| | |||||||||||    
T  38644149 tatattattcttttaacatattttgatcatatttttctattattatataaagataaatgatagcatataag 38644219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 8980717 - 8980784
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||||| ||||||||| | |||| | |||||||||||||||||||||| ||||||  |||||||||||    
T  8980717 attatttacataacatgtattgaccctatttttctattaatatataaagacaaaatatagcatataag 8980784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 15443466 - 15443419
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  15443466 attattcacgtaacatgttttgatcatatttttctactaatatataaa 15443419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 40711120 - 40711078
Alignment:
Q  66 attcacataacatattttgatcatatttttctattaatatata 108  Q
    ||||||||||||| |||||||| |||||||||| |||||||||    
T  40711120 attcacataacatgttttgatcttatttttctactaatatata 40711078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 44647937 - 44647864
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| |||||||||||| || ||||||||||||||||||  |  |||||||||| ||||| | |||||| ||||    
T  44647937 atgtgtattattcacatgacttattttgatcatattttttaacaaatatataaatacaaatgttagcatgtaag 44647864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 1191183 - 1191239
Alignment:
Q  73 taacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataa 129  Q
    |||||||||||||| ||||||||||| || |||||||| | |||  |||||||||||    
T  1191183 taacatattttgattatatttttctactattatataaagataaattgtagcatataa 1191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 48896961 - 48897009
Alignment:
Q  62 tattattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||| || ||| ||||||||| |||||||||||| |||||||||||    
T  48896961 tattattgacctaaaatattttgaccatatttttctactaatatataaa 48897009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 43810 - 43749
Alignment:
Q  69 cacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| ||| |||||||||||||    
T  43810 cacataacatactttgaccatattttcctactaatatataaaaataaatggtagcatataag 43749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 25012327 - 25012379
Alignment:
Q  64 ttattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    |||||||||||||||| |||||| |||||||||||  ||||||||||||||||    
T  25012327 ttattcacataacataatttgattatatttttctacaaatatataaaaacaaa 25012379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 3686997 - 3686945
Alignment:
Q  60 tatattattcacataacatattttgatcatatttttctattaatatataaaaa 112  Q
    |||| |||| || ||||||| ||||||||||||||||||||||||||| ||||    
T  3686997 tatactattgacctaacatactttgatcatatttttctattaatatattaaaa 3686945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 19240816 - 19240757
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    ||||||| |||||||||||| |||||||| |||||||||  | ||||||||||| |||||    
T  19240816 atgtatactattcacataacttattttgaccatattttttaactaatatataaatacaaa 19240757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 3535378 - 3535428
Alignment:
Q  66 attcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    ||||| ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  3535378 attcatataacatattttgatcatattttcctacttatatataaagacaaa 3535428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 33227754 - 33227714
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaa 112  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  33227754 ataacacattttgatcatatttttctattaatatataaaaa 33227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 15771092 - 15771055
Alignment:
Q  73 taacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  15771092 taacatattttgatcgtatttttctattaatatataaa 15771055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 5096298 - 5096338
Alignment:
Q  70 acataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  5096298 acataacttattttgatcatatttttctactaatatataaa 5096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 45001910 - 45001838
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataa 129  Q
    |||| ||||||||| ||||||||||||||   |||||||||  ||||||||||| ||||||  ||||||||||    
T  45001910 atgtgtattattcatataacatattttgactctatttttctgctaatatataaagacaaaatatagcatataa 45001838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 1381326 - 1381287
Alignment:
Q  91 tttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  1381326 tttttttattaatatataaaaacaaaagttagcatataag 1381287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 24252003 - 24252066
Alignment:
Q  62 tattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcat 125  Q
    ||||||||||||||| |||||||| |||||||||  | ||||||||||| ||||| | ||||||    
T  24252003 tattattcacataacttattttgaccatattttttaactaatatataaatacaaatgttagcat 24252066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 11384056 - 11384018
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  11384056 ataacttattttgatcatatttttctactaatatataaa 11384018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 31975548 - 31975507
Alignment:
Q  68 tcacataacatattttgatcatatttttctattaatatataa 109  Q
    |||||||||||| ||||||| |||||||||| ||||||||||    
T  31975548 tcacataacatagtttgatcctatttttctactaatatataa 31975507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 11277601 - 11277641
Alignment:
Q  70 acataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||| || |||||||||||||||||| |||||||||||    
T  11277601 acataacttactttgatcatatttttctactaatatataaa 11277641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 14802972 - 14802924
Alignment:
Q  82 ttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| |||||||||||| ||||||||||| ||||||  |||||||||||    
T  14802972 ttgaccatatttttctactaatatataaagacaaaatatagcatataag 14802924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 21894384 - 21894333
Alignment:
Q  81 tttgatcatatttttctattaatatataaaaacaaaaggtagcatataagtt 132  Q
    |||||||||||||||||||||||||| ||| ||||| ||| |||||||||||    
T  21894384 tttgatcatatttttctattaatatacaaagacaaatggtggcatataagtt 21894333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 9776563 - 9776610
Alignment:
Q  85 atcatatttttctattaatatataaaaacaaaaggtagcatataagtt 132  Q
    |||||||||||||| |||||| |||||| |||||||| ||||||||||    
T  9776563 atcatatttttctactaatatgtaaaaataaaaggtatcatataagtt 9776610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 27634730 - 27634679
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    ||||||||||| |||||||||| ||| ||||||| ||||||||||| |||||    
T  27634730 tattcacataatatattttgatgatacttttctactaatatataaagacaaa 27634679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 30057343 - 30057410
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||||||||||| ||| | |||||||||  | |||||||||||| |||| | |||||||||||    
T  30057343 attattcacataacatactttaaccatattttttaactaatatataaaagcaaatgttagcatataag 30057410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 9794238 - 9794283
Alignment:
Q  85 atcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||||||||||||| |||||| |||||| |||||||| ||||||||    
T  9794238 atcatatttttctactaatatgtaaaaataaaaggtatcatataag 9794283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 30080753 - 30080708
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||||| ||||||| |||||||||||||||||| |||||| ||||    
T  30080753 tattcacgtaacatactttgatcatatttttctactaatatctaaa 30080708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 30681991 - 30681950
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatata 106  Q
    |||||||||||||||  ||||||||||||||||| |||||||    
T  30681991 tattcacataacataccttgatcatatttttctaataatata 30681950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 34519629 - 34519584
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaa 110  Q
    ||||| ||||| |||||||||||||| ||||||| |||||||||||    
T  34519629 tattcgcataatatattttgatcatacttttctactaatatataaa 34519584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 36373345 - 36373398
Alignment:
Q  63 attattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    ||||| ||||||||||| |||||||||| |||||||||| |||| ||| |||||    
T  36373345 attatccacataacatactttgatcataattttctattattatacaaagacaaa 36373398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 40414959 - 40415032
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| ||| ||||| |||| || |||||||| |||||||||| ||||||||||| ||||||  || ||||||||    
T  40414959 atgtttatgattcatataatatgttttgatcttatttttctactaatatataaagacaaaatatatcatataag 40415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 39946319 - 39946379
Alignment:
Q  56 catgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    |||||| | ||||||||||||||||||| |||| |||||| ||||  |||||||| |||||    
T  39946319 catgtaaactattcacataacatattttaatcagatttttttattgttatataaatacaaa 39946379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 41751626 - 41751566
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcat 125  Q
    |||| |||||||||| |||||||||||||||  | ||||||||||| ||||| | ||||||    
T  41751626 tatttacataacatactttgatcatattttttaactaatatataaatacaaatgttagcat 41751566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 48144001 - 48143941
Alignment:
Q  44 tgacctaattgaca-tgtatattattcacataacatattttgatcatatttttctattaat 103  Q
    ||||||| |||||| | ||||||||| |||||| ||||||||| |||||||||||| ||||    
T  48144001 tgacctatttgacaatatatattattgacataatatattttgaccatatttttctactaat 48143941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 49431537 - 49431493
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataa 109  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||    
T  49431537 tattcaaattacatacttttatcatatttttctattaatatataa 49431493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 4701170 - 4701209
Alignment:
Q  73 taacatattttgatcatatttttctattaatatataaaaa 112  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  4701170 taacttattttgaccatatttttctattaatatataaaaa 4701209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 6500183 - 6500246
Alignment:
Q  67 ttcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| |||||||| |||||   |||||||||||||||||||||| ||||||  |||||||||||    
T  6500183 ttcatataacatactttgactctatttttctattaatatataaagacaaaatatagcatataag 6500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 17407327 - 17407362
Alignment:
Q  73 taacatattttgatcatatttttctattaatatata 108  Q
    |||||||||||||| |||||||||||||||||||||    
T  17407327 taacatattttgattatatttttctattaatatata 17407362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 6175150 - 6175080
Alignment:
Q  60 tatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    ||||||||||| |||| ||| ||||||   |||||| |||||||||||||| ||||||  |||||||||||    
T  6175150 tatattattcatataatatactttgatttaatttttttattaatatataaagacaaaatatagcatataag 6175080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 33053645 - 33053695
Alignment:
Q  62 tattattcacataacatattttgatcatatttttctattaatatataaaaa 112  Q
    |||||||||| ||||||||||||||  ||||||| ||||| ||||||||||    
T  33053645 tattattcacgtaacatattttgattttatttttttattattatataaaaa 33053695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 32017259 - 32017324
Alignment:
Q  65 tattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||||||||||| || |||||||||||||||  | ||||||||||| ||||| | |||||| ||||    
T  32017259 tattcacataacttactttgatcatattttttaactaatatataaatacaaatgttagcatgtaag 32017324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 34278796 - 34278723
Alignment:
Q  57 atgtatattattcacataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||| |||| |||| ||||||| |||||| | |||||||||| ||||||||||| ||||||  || ||||||||    
T  34278796 atgtgtattgttcatataacatgttttgaccttatttttctactaatatataaagacaaaatataacatataag 34278723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 43165777 - 43165818
Alignment:
Q  89 tatttttctattaatatataaaaacaaaaggtagcatataag 130  Q
    |||||||||||||||||||||||||||| |||| ||| ||||    
T  43165777 tatttttctattaatatataaaaacaaacggtaacatttaag 43165818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 19342819 - 19342851
Alignment:
Q  62 tattattcacataacatattttgatcatatttt 94  Q
    |||||||| ||||||||||||||||||||||||    
T  19342819 tattattcgcataacatattttgatcatatttt 19342851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 34038110 - 34038054
Alignment:
Q  56 catgtatattattcacataacatattttgatcatatttttctattaatatataaaaa 112  Q
    ||||| ||||||||| ||||  || ||| ||||||||||| ||||||||||||||||    
T  34038110 catgtttattattcatataatctactttaatcatatttttgtattaatatataaaaa 34038054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 37303851 - 37303895
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaacaaa 116  Q
    |||||||||||||| |||||||||||| ||||||| ||| |||||    
T  37303851 ataacatattttgagcatatttttctaataatatacaaagacaaa 37303895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 19901 - 19967
Alignment:
Q  72 ataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcatataagttctataa 138  Q
    |||| ||| |||||||||||| || || || ||||||||||||||  |||||||||||||| |||||    
T  19901 ataagatactttgatcatattcttttactattatataaaaacaaattgtagcatataagttttataa 19967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 26283 - 26339
Alignment:
Q  70 acataacatattttgatcatatttttctattaatatataaaaacaaaaggtagcata 126  Q
    |||||| ||| ||||||||||||||| || ||||||||||| ||||||  |||||||    
T  26283 acataatataatttgatcatatttttgtactaatatataaagacaaaatatagcata 26339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University