View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_13 (Length: 509)

Name: NF11885_low_13
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_13
NF11885_low_13
[»] chr2 (3 HSPs)
chr2 (107-496)||(16485934-16486319)
chr2 (408-448)||(16490841-16490881)
chr2 (16-47)||(16485904-16485935)
[»] chr3 (4 HSPs)
chr3 (68-235)||(10876090-10876255)
chr3 (63-200)||(5301930-5302069)
chr3 (62-227)||(24678126-24678289)
chr3 (62-227)||(24719557-24719731)
[»] chr1 (1 HSPs)
chr1 (62-225)||(19242437-19242598)
[»] chr7 (1 HSPs)
chr7 (63-175)||(20528461-20528573)
[»] chr4 (1 HSPs)
chr4 (117-188)||(11357281-11357354)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 107 - 496
Target Start/End: Original strand, 16485934 - 16486319
Alignment:
Q  107 tagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaacttttatatatatacaacttctactaactaaattcattcattaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16485934 tagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaacttttatatatatacaacttctactaactaaattcattcattaa 16486033  T
Q  207 tgagaaatatattttcattcaattctctcatttcattcatagtaatttacattttaaaattgaaaagatactatcagcttcaatgtattccatcaattag 306  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16486034 tgagaaatatattttcattcaattctctctattcattcatagtaatttacattttaaaattggaaagatactatcagcttcaatgcattccatcaattag 16486133  T
Q  307 acgagaaattaagtttctattcgatacaaggacaacacttaaatttcatacacttattgtc--tttgaatgtgtgaaaaacatttgttcatttggttcta 404  Q
    |||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||| |||      ||    
T  16486134 acgataaattaagtttctattagatataaggacaacactcaaatttcatacacttattgtcgttgtgaatgtgtgaaaaacatttgtttatt------ta 16486227  T
Q  405 gcactttggtccttgtgatttgatgatttcattttgcaattgctggtttcatttcatgataagataaacgtttaaggcaaaatcgaatgtct 496  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16486228 gcactttgatccttgtgatttgatgatttcattttgcaactgctggtttcatttcatgataagataaacgtttaaggcaaaattgaatgtct 16486319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 16490841 - 16490881
Alignment:
Q  408 ctttggtccttgtgatttgatgatttcattttgcaattgct 448  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  16490841 ctttggtccttgtgatttgatgatttcatcttgcaactgct 16490881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 16485904 - 16485935
Alignment:
Q  16 gatattacatcatgtcagctaagaaaggatta 47  Q
    ||||||||||||||||||||||||||||||||    
T  16485904 gatattacatcatgtcagctaagaaaggatta 16485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 10876255 - 10876090
Alignment:
Q  68 gttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa--ctt 165  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |  |||    
T  10876255 gttagagaatgattacttgtgcaacaagtaatcattatatagttaagacttagtgatattgtgtttgttacacatggtaagctaacatagagacactctt 10876156  T
Q  166 ttatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattcaattctctc 235  Q
     | |||||||||||||| | | | |    || ||||||||||||||||| |||||| |||||||| ||||    
T  10876155 gtgtatatatacaacttgttcaagc----ttaattcattaatgagaaatctatttttattcaattatctc 10876090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 5302069 - 5301930
Alignment:
Q  63 agttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa 162  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||| |    
T  5302069 agttagttagagaatgattatttgtgcaacaagtattcattagatagttaagagttagcgatcttgtgtttgctacacataataagctaacatggagaca 5301970  T
Q  163 --cttttatatatatacaacttctactaactaaattcatt 200  Q
      ||| | || | || ||||||||||||||| ||||||||    
T  5301969 ctcttgtgtacacattcaacttctactaactcaattcatt 5301930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 24678126 - 24678289
Alignment:
Q  62 cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacat--agag 159  Q
    |||||||||||||||||||||| |||| || ||| |||||||| ||||||||||||||| |||||  ||||||| |||||| ||||||||||||  |||     
T  24678126 cagttagttagagaatgattacgtgtgtaataaggaatcattaaatagttaagagttagcgatctcatgtttgtcacacataataagctaacatcgagac 24678225  T
Q  160 aaacttttatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattca 227  Q
    || ||| | |||||||||||||| ||||| || |    ||||||||||||||||| ||||||||||||    
T  24678226 aatcttgtgtatatatacaacttgtactatctca----attcattaatgagaaatctattttcattca 24678289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 24719557 - 24719731
Alignment:
Q  62 cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaaga-----------gttagtgatcttgtgtttgttacacatgataagct 150  Q
    ||||||||||||||||||||||  ||| |||| ||||| |||||||||||||||           |||||||||||  ||||||| |||||| |||||||    
T  24719557 cagttagttagagaatgattactagtgtaacaggtaattattagatagttaagatttagttaaatgttagtgatctcatgtttgtcacacataataagct 24719656  T
Q  151 aacatagagaaactttt--atatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattca 227  Q
    |||||||||| ||| ||   |||||||||||||| ||||| || |    ||||||||||||||||| ||||||||||||    
T  24719657 aacatagagacactcttgcgtatatatacaacttgtactagctca----attcattaatgagaaatctattttcattca 24719731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 19242437 - 19242598
Alignment:
Q  62 cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaa 161  Q
    ||||||||||||||||||| || |||||||||||||||||| || ||||||||||||| | | |||||||||||||||||| |||||||||||||||||     
T  19242437 cagttagttagagaatgatgacatgtgcaacaagtaatcatgagttagttaagagttaataagcttgtgtttgttacacataataagctaacatagagac 19242536  T
Q  162 acttt--tatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcatt 225  Q
    |||||  | |||||||| ||||| ||||| || |    |||||| |||||||||| ||||||||||    
T  19242537 acttttgtgtatatataaaacttgtactagctca----attcatcaatgagaaatctattttcatt 19242598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 20528573 - 20528461
Alignment:
Q  63 agttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa 162  Q
    ||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||||  |||| ||||||| ||||||||||||||| |||      
T  20528573 agttagttagagaatgattacttgtgtaataagtaatcattagataattaagagttagtgatctcatgttggttacacgtgataagctaacataaagatg 20528474  T
Q  163 cttttatatatat 175  Q
    ||||||| |||||    
T  20528473 cttttatgtatat 20528461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 11357354 - 11357281
Alignment:
Q  117 ttagtgatcttgtgtttgttacacatgataagctaacatagagaaac--ttttatatatatacaacttctacta 188  Q
    ||||| ||||| |||| ||||||||| ||||||||||||||||||||  |||| |||||||||||||| |||||    
T  11357354 ttagtaatcttatgttggttacacataataagctaacatagagaaactattttgtatatatacaacttgtacta 11357281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University