View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_14 (Length: 497)
Name: NF11885_low_14
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Original strand, 13387280 - 13387752
Alignment:
| Q |
7 |
caaatgatcgtgattgagattggagcgagattgaatgcaaattagcgtgattaagagtcgttcctaaattagagtgatgtcaaagcgtttctaagaagca |
106 |
Q |
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| T |
13387280 |
caaatgatcgtgattgagattggagcgagattgaatgcaaattagcgtgattaagagtcgttcctaaattagagtgatgtcaaagcgtttctaagaagca |
13387379 |
T |
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| Q |
107 |
cattatgtaggcacacagaagatatatacggataaattataaaactgaaatatcaaatcaatcaatttaaggtacttgaaatttaaatctaaattctaat |
206 |
Q |
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| T |
13387380 |
cattatgtaggcacacataagatatataagtataaattataacactgaaatatcaaatcaatcaaattaaggcacttgaaattaaaatctaaattcga-- |
13387477 |
T |
|
| Q |
207 |
gaagttgcagattgtaaaatatttttgtgcattcaaattcaaaagtgaacaagatgcaatgactatttttcatgtcttgtgttaataaggatagagaaat |
306 |
Q |
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| T |
13387478 |
---gttgcagattgtaaaatatttttgtgcattcaaattcaaaagtgaacaagatgcaatgactatttttcatgtcttgtgttaataaggatagagaaat |
13387574 |
T |
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| Q |
307 |
acatcatgtcattcataatacctctgccaactttatctctaataccacaagatatataagtattaggtcctataccattctgcaaagaataatgaaataa |
406 |
Q |
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| T |
13387575 |
ataccatgtcattcataatacctctgccaacattatcactaatcccacaagatatataagtcttaggtcctataccattctgcaaagaataatgaaataa |
13387674 |
T |
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| Q |
407 |
cttatctgcaacattaaaaaggccgcacttggaattaatatactcaagtaatgacaagttattgataagttcgtgtct |
484 |
Q |
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| T |
13387675 |
cttatctgcaacattaaaaaggccgcacttggaattaatatactgaagaaatgacaagttattgataagttcatgtct |
13387752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 36998655 - 36998786
Alignment:
| Q |
326 |
acctctgccaactttatctctaataccacaagatatataagtattaggtcctataccattctgcaaagaataatgaaataacttatctgcaacattaaaa |
425 |
Q |
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||||||||||| || || ||||| ||| |||||||||| | || ||||||| | |||||||||| || |||||| || ||| |||||||||||| | |
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| T |
36998655 |
acctctgccaagttcgtcactaatcccataagatatatatatcttgggtcctacatcattctgcaaggagtaatgaggcaatttagctgcaacattaaga |
36998754 |
T |
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| Q |
426 |
aggccgcacttggaattaatatactcaagtaa |
457 |
Q |
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| T |
36998755 |
aggccccacttggagtgtatatactgaagtaa |
36998786 |
T |
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