View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_17 (Length: 451)
Name: NF11885_low_17
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 35273022 - 35273443
Alignment:
| Q |
18 |
agaaatctggcagtgcttggccggaccatcgttcaaaattccgaaactaaattctcatgttttttactttccactaggtcacttggaacatgcctgccct |
117 |
Q |
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| T |
35273022 |
agaaatctggcagtgcttggccggaccatcgttcaaaattccgaaactaaattctcaagttttttactttccactaggtcacttggaacatgcctgccct |
35273121 |
T |
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| Q |
118 |
tcccctaacactgaagcactctcccttatcaatagttaccgtcccatcattccgtgcgtcgtctccaacgttgatctcttagctaatcttcaaactgacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
35273122 |
tcccctaacactgaagcactctcccttatcaatagttaccgtcccatcattccgtgcgtcgtctccgacgttgatctcttagctgatcttcaaactgatg |
35273221 |
T |
|
| Q |
218 |
aagtctttgcaaaactgatcctaactcccatcaccaatgacagtgttcacgaacctcaggagcctgaggttcgtgaaaacgaacatggtggtgataggct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35273222 |
aagtctttgcaaaactgatcctaactcccatcaccaatgacagtgttcacgaacctcaggagcctgaggttcgtgaaaatgaacatggtggtgataggct |
35273321 |
T |
|
| Q |
318 |
tgttttctctggcaagactctcccccagtcggatgctaataatggcggtgcattctccgtaccttctgaatgcgcaaaattgatattcccgccacttgac |
417 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35273322 |
tgttttctctggcaagactctcacccagtcggatgctaataatggcggtgcattctccgtaccttctgaatgcgcgaaattgatattcccgccacttgac |
35273421 |
T |
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| Q |
418 |
ctaacatccccaatgccgtctc |
439 |
Q |
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| T |
35273422 |
ctaacatccccaatgccgtctc |
35273443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 419
Target Start/End: Original strand, 17914332 - 17914471
Alignment:
| Q |
280 |
cctgaggttcgtgaaaacgaacatggtggtgataggcttgttttctctggcaagactctcccccagtcggatgctaataatggcggtgcattctccgtac |
379 |
Q |
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||||||||||||||| || |||||| || | || | |||||| ||||||||| ||||| | | ||| ||||||||||| |||||||||||||| || | |
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| T |
17914332 |
cctgaggttcgtgaagaccaacatgacggggttaaggttgtttcctctggcaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgc |
17914431 |
T |
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| Q |
380 |
cttctgaatgcgcaaaattgatattcccgccacttgacct |
419 |
Q |
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| T |
17914432 |
ctagcgaatgcgcaaaattaatcttcccgccacttgacct |
17914471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 25443866 - 25443816
Alignment:
| Q |
76 |
gttttttactttccactaggtcacttggaacatgcctgcccttcccctaac |
126 |
Q |
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| T |
25443866 |
gtttattacttcccacatggtcacttggaacatgcctgcccttcccctaac |
25443816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 17976777 - 17976688
Alignment:
| Q |
330 |
caagactctcccccagtcggatgctaataatggcggtgcattctccgtaccttctgaatgcgcaaaattgatattcccgccacttgacct |
419 |
Q |
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| T |
17976777 |
caagactctcaccccatctgatgctaacaatggcggtgcattctctgtgccagtggaatgcgcgaaattaatcttcccgccacttgacct |
17976688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 381
Target Start/End: Original strand, 8823239 - 8823388
Alignment:
| Q |
229 |
aaactgatcctaactcccatcaccaatgacagtgttcacgaacctcaggagcctgaggttcgtgaaaacgaacatggtggtgataggcttgttttctctg |
328 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||| | |||||||||| ||| |||||| | |||||| | |||||| ||||| |
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| T |
8823239 |
aaactgctcctaactcccatcaccgatggttgtgttcacgaacctcctg---ctgaggttcgggaagacgaacctaaaggtgatgagtttgtttcctctg |
8823335 |
T |
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| Q |
329 |
gcaagactctcccccagtcggatgctaataatggcggtgcattctccgtacct |
381 |
Q |
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| |||||||| ||| || ||||||||||| || |||||||||||||||||| |
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| T |
8823336 |
gaaagactctaaccctatctgatgctaataacggtggtgcattctccgtacct |
8823388 |
T |
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