View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_2 (Length: 885)

Name: NF11885_low_2
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_2
NF11885_low_2
[»] scaffold0038 (6 HSPs)
scaffold0038 (15-594)||(44074-44653)
scaffold0038 (328-582)||(28579-28833)
scaffold0038 (286-491)||(40739-40940)
scaffold0038 (474-582)||(35856-35964)
scaffold0038 (20-92)||(35971-36043)
scaffold0038 (328-384)||(28897-28953)
[»] chr6 (71 HSPs)
chr6 (15-594)||(28243912-28244491)
chr6 (15-594)||(28296226-28296805)
chr6 (15-594)||(28515268-28515847)
chr6 (20-594)||(28186511-28187091)
chr6 (20-594)||(28326595-28327169)
chr6 (20-594)||(28504231-28504805)
chr6 (214-582)||(28182247-28182606)
chr6 (328-582)||(28228081-28228335)
chr6 (204-490)||(28140756-28141042)
chr6 (181-490)||(29842644-29842953)
chr6 (286-491)||(28240577-28240778)
chr6 (248-479)||(26647711-26647942)
chr6 (248-479)||(26753679-26753910)
chr6 (236-479)||(27704961-27705204)
chr6 (280-490)||(29827207-29827417)
chr6 (278-475)||(31285795-31285992)
chr6 (595-690)||(14958902-14958997)
chr6 (236-479)||(27680182-27680425)
chr6 (235-490)||(28787459-28787714)
chr6 (181-479)||(26803678-26803976)
chr6 (274-479)||(27609865-27610070)
chr6 (235-479)||(28793591-28793835)
chr6 (593-704)||(8877824-8877934)
chr6 (235-479)||(27603410-27603654)
chr6 (190-490)||(28097104-28097404)
chr6 (272-479)||(27717242-27717449)
chr6 (278-479)||(26624503-26624704)
chr6 (278-479)||(26730480-26730681)
chr6 (279-479)||(27697336-27697536)
chr6 (181-479)||(26885299-26885597)
chr6 (234-481)||(27426317-27426564)
chr6 (246-479)||(27676337-27676570)
chr6 (474-582)||(28235694-28235802)
chr6 (328-479)||(26950975-26951126)
chr6 (328-479)||(26978612-26978763)
chr6 (409-479)||(26636878-26636948)
chr6 (409-479)||(26742844-26742914)
chr6 (409-479)||(26849944-26850014)
chr6 (278-479)||(27591770-27591971)
chr6 (272-479)||(29469444-29469651)
chr6 (181-479)||(26657194-26657492)
chr6 (181-479)||(26763165-26763463)
chr6 (409-479)||(26960357-26960427)
chr6 (278-479)||(27663963-27664164)
chr6 (595-704)||(33596415-33596524)
chr6 (20-92)||(28235809-28235881)
chr6 (393-488)||(26812751-26812846)
chr6 (30-157)||(28096953-28097080)
chr6 (281-479)||(26825051-26825249)
chr6 (234-356)||(27530009-27530131)
chr6 (181-473)||(2186064-2186356)
chr6 (280-479)||(26862812-26863011)
chr6 (425-479)||(25075099-25075153)
chr6 (51-156)||(2186369-2186474)
chr6 (745-797)||(14959050-14959102)
chr6 (186-357)||(25512245-25512416)
chr6 (235-357)||(25484413-25484535)
chr6 (235-357)||(26057276-26057398)
chr6 (235-357)||(26077246-26077368)
chr6 (235-357)||(27215806-27215928)
chr6 (280-357)||(26144222-26144299)
chr6 (395-476)||(26938264-26938345)
chr6 (276-357)||(29523255-29523336)
chr6 (184-312)||(28479024-28479152)
chr6 (244-312)||(28490202-28490270)
chr6 (184-312)||(29695041-29695169)
chr6 (184-312)||(29791479-29791607)
chr6 (244-312)||(29802612-29802680)
chr6 (278-349)||(29727699-29727770)
chr6 (426-488)||(29476962-29477024)
chr6 (328-384)||(28228399-28228455)
[»] scaffold0019 (1 HSPs)
scaffold0019 (20-582)||(56785-57347)
[»] chr3 (3 HSPs)
chr3 (594-877)||(27437912-27438188)
chr3 (593-797)||(9775127-9775329)
chr3 (184-344)||(615163-615323)
[»] chr4 (9 HSPs)
chr4 (604-797)||(4103226-4103419)
chr4 (181-485)||(5089602-5089906)
chr4 (234-481)||(18074991-18075238)
chr4 (247-479)||(18678274-18678506)
chr4 (329-479)||(18722881-18723031)
chr4 (247-479)||(18698114-18698346)
chr4 (247-479)||(18730218-18730450)
chr4 (328-479)||(18654272-18654423)
chr4 (328-479)||(18688421-18688572)
[»] chr8 (7 HSPs)
chr8 (595-786)||(15327849-15328039)
chr8 (595-786)||(15508218-15508408)
chr8 (292-490)||(31906275-31906473)
chr8 (292-490)||(35984520-35984718)
chr8 (280-479)||(29272589-29272788)
chr8 (270-353)||(16353696-16353779)
chr8 (184-344)||(12590108-12590268)
[»] chr2 (7 HSPs)
chr2 (595-786)||(27513641-27513831)
chr2 (274-488)||(3280882-3281096)
chr2 (738-797)||(15729677-15729736)
chr2 (397-479)||(17992083-17992165)
chr2 (393-490)||(17662492-17662589)
chr2 (393-490)||(17713518-17713615)
chr2 (51-92)||(3281272-3281313)
[»] scaffold0186 (1 HSPs)
scaffold0186 (593-797)||(2619-2822)
[»] chr5 (2 HSPs)
chr5 (181-485)||(16692093-16692397)
chr5 (272-310)||(13717601-13717639)
[»] chr1 (8 HSPs)
chr1 (235-479)||(28126381-28126625)
chr1 (595-797)||(21859612-21859813)
chr1 (186-490)||(266997-267301)
chr1 (269-454)||(28132241-28132426)
chr1 (594-664)||(1390392-1390462)
chr1 (276-478)||(5922216-5922418)
chr1 (595-690)||(22916284-22916379)
chr1 (423-479)||(26137120-26137176)
[»] scaffold1870 (1 HSPs)
scaffold1870 (189-479)||(1-291)
[»] chr7 (2 HSPs)
chr7 (595-704)||(48629425-48629534)
chr7 (719-780)||(48629549-48629609)
[»] scaffold0277 (2 HSPs)
scaffold0277 (235-479)||(12381-12625)
scaffold0277 (278-479)||(3461-3662)
[»] scaffold0419 (1 HSPs)
scaffold0419 (189-479)||(8719-9009)
[»] scaffold0349 (1 HSPs)
scaffold0349 (272-479)||(2282-2489)
[»] scaffold0003 (2 HSPs)
scaffold0003 (234-481)||(60799-61046)
scaffold0003 (598-684)||(111003-111089)
[»] scaffold0131 (1 HSPs)
scaffold0131 (617-684)||(10296-10363)
[»] scaffold0012 (1 HSPs)
scaffold0012 (269-346)||(238605-238682)
[»] scaffold0164 (1 HSPs)
scaffold0164 (631-684)||(29932-29984)


Alignment Details
Target: scaffold0038 (Bit Score: 536; Significance: 0; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Complemental strand, 44653 - 44074
Alignment:
Q  15 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44653 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 44554  T
Q  115 atttctttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactga 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  44553 atttctttacccattttctctatcaagaaatgtaacgtcacaacataattcccctcgtacctgttgatctttatgagagatttttcatccaacacactga 44454  T
Q  215 tttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacatt 314  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44453 tttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaaattatatcctttgaagcagcaagcaatgtcgagaaaaacatt 44354  T
Q  315 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44353 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 44254  T
Q  415 cctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttg 514  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44253 cctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaccgtaaaacaccatcgaaatttg 44154  T
Q  515 aatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44153 aatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 44074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 328 - 582
Target Start/End: Complemental strand, 28833 - 28579
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    ||||||| ||||||||||| ||||||||||||    || |||||||| |||||||||   | | ||| ||||||||||||||||||| | |||||||| |    
T  28833 tccaaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttcttcctgatttaatgcagatttccattcttcaatattcttcc 28734  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttatt 527  Q
    |||| |||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||| || |||||||  |||||||||||||| | | | ||    
T  28733 caaacaagtttgaacccactacttctaaaaccaatggaatgccaaaagaaaaagttactgcacaccgcaaaacacggtcgaaatttgaatcgaccatgtt 28634  T
Q  528 atttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaactta 582  Q
    || ||||||||  ||| |||||| |||||||||||||||| ||||||||||||||    
T  28633 atatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaactta 28579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 286 - 491
Target Start/End: Complemental strand, 40940 - 40739
Alignment:
Q  286 aagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttc 385  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||  || |||| |||| | |||||||||     
T  40940 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 40845  T
Q  386 tataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttac 485  Q
     |||| | |||||||  |||| ||||||||||||||    |||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||     
T  40844 catactggtctaatgtggattcccattctcctatatctaatccaaacaagttggaaccaactacttctaaagctaatggtaggccagaagcataagttat 40745  T
Q  486 tgcaca 491  Q
    ||||||    
T  40744 tgcaca 40739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 35964 - 35856
Alignment:
Q  474 agcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctca 573  Q
    |||||||||||||||||| |  |||||||| | |||||||||||| | ||| |||| ||| ||||  ||| ||||||||||||||||||||||| |||||    
T  35964 agcataagttactgcacacctcaaaacaccgttgaaatttgaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctca 35865  T
Q  574 tttaactta 582  Q
    |||||||||    
T  35864 tttaactta 35856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 36043 - 35971
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctc 92  Q
    ||||||||| |||| ||||||||||||||||||||||||||  |||||||||||| ||| ||||||| |||||    
T  36043 tattcaccttatttgcttctaagacatcaattatatctttacagaaccacaacctactacgtcttcctggctc 35971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 28953 - 28897
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgt-atctttttaatcggaatcctt 384  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||    
T  28953 tccaaagcatcaaagcttattttaagtatct-ctgtgatatttttaatgggaatcctt 28897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 536; Significance: 0; HSPs: 71)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Complemental strand, 28244491 - 28243912
Alignment:
Q  15 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244491 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 28244392  T
Q  115 atttctttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactga 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  28244391 atttctttacccattttctctatcaagaaatgtaacgtcacaacataattcccctcgtacctgttgatctttatgagagatttttcatccaacacactga 28244292  T
Q  215 tttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacatt 314  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28244291 tttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaaattatatcctttgaagcagcaagcaatgtcgagaaaaacatt 28244192  T
Q  315 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244191 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 28244092  T
Q  415 cctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttg 514  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28244091 cctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaccgtaaaacaccatcgaaatttg 28243992  T
Q  515 aatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28243991 aatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 28243912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 594
Target Start/End: Original strand, 28296226 - 28296805
Alignment:
Q  15 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 114  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||  |||    
T  28296226 atcagtattcaccttattttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcaca 28296325  T
Q  115 atttctttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactga 214  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||  ||||| || |||||||||||||||||| |||| |||||| ||||    
T  28296326 atttctttacccattttctctatcaaggcatgtaatgtcacaacataattccccaggtaccagtagatctttatgagagatttgtcatgcaacactctga 28296425  T
Q  215 tttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacatt 314  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  28296426 tttgataattcatgcagttaccataatgagcatgaagtatattttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatt 28296525  T
Q  315 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 414  Q
     | |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||| ||  |||||  |||| ||  |||||||||||||||||||    
T  28296526 tttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatactgacttaatgcagatttccattct 28296625  T
Q  415 cctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttg 514  Q
    | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||   | || |||||||    
T  28296626 cttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttacagcctggtgtaaaatgtcgtcaaaatttg 28296725  T
Q  515 aatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
     ||| |  || ||||||||||||| |||| | ||||||||||||||||||||  | |||||||||||| ||| |||||||    
T  28296726 tatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatat 28296805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 594
Target Start/End: Complemental strand, 28515847 - 28515268
Alignment:
Q  15 atcagtattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgaca 114  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||  |||    
T  28515847 atcagtattcaccttattttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcaca 28515748  T
Q  115 atttctttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactga 214  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||  ||||| || |||||||||||||||||| |||| |||||| ||||    
T  28515747 atttctttacccattttctctatcaaggcatgtaatgtcacaacataattccccaggtaccagtagatctttatgagagatttgtcatgcaacactctga 28515648  T
Q  215 tttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacatt 314  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  28515647 tttgataattcatgcagttaccataatgagcatgaagtatattttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatt 28515548  T
Q  315 ctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattct 414  Q
     | |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||| ||  |||||  |||| ||  |||||||||||||||||||    
T  28515547 tttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatactgacttaatgcagatttccattct 28515448  T
Q  415 cctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttg 514  Q
    | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||   | || |||||||    
T  28515447 cttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttacagcctggtgtaaaatgtcgtcaaaatttg 28515348  T
Q  515 aatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
     ||| |  || ||||||||||||| |||| | ||||||||||||||||||||  | |||||||||||| ||| |||||||    
T  28515347 tatcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatat 28515268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 28187091 - 28186511
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttc 119  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||| | ||    |||||||||    
T  28187091 tattcaccttatttgcttctaagacatcaattatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttc 28186992  T
Q  120 tttacccattttctctatcaagacatgtaacgtcacaacataatt----ctcc--tcgtacctgtcgatctttatgagagatttttcatccaacacactg 213  Q
    |||||||||||||||||||||| |||||||||||||||||| | |    ||||  | | ||   | ||| |||| ||||||||| ||   |||||| |||    
T  28186991 tttacccattttctctatcaaggcatgtaacgtcacaacatcagtaagactccattggcactgcttgatatttaggagagatttatcgagcaacactctg 28186892  T
Q  214 atttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacat 313  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  28186891 atttgatatttcatgcagttaccataatgagcatgaagtacatcttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcgagaaaaacat 28186792  T
Q  314 tctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattc 413  Q
    | || ||  ||| | |||||||||||||||||||||| |||||||| || |||||||||   |||||||||  |||| ||| ||||||||||||||||||    
T  28186791 tttgttctgcttcccccaaagcatcaaagcttactttgagtatctcttggatctttttatcgggaatcctttcatactgatttaatgcagatttccattc 28186692  T
Q  414 tcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaattt 513  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |  |||||||||    
T  28186691 tcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcatggtgtaaaacgctgtcgaaattt 28186592  T
Q  514 gaatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
    | ||| |  || |||||||| ||||  ||| || |||||||||||||||||||  |||||||||||||| |||||| ||||    
T  28186591 gtatcaactttgttattttttaaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatat 28186511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 28327169 - 28326595
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttc 119  Q
    ||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||| |||  | ||||||| || ||| | |||| ||     ||||||||    
T  28327169 tattcaccttactttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttc 28327070  T
Q  120 tttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactgatttga 219  Q
    |||||| |||| ||| || ||| ||||||| || | |  |  | |||||  | ||  || |||||| |||||||||||||||  ||||||||||||||||    
T  28327069 tttacctatttgctccattaaggcatgtaatgtaagataactagtctcccagaactggttgatcttgatgagagatttttcaagcaacacactgatttga 28326970  T
Q  220 tatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgct 319  Q
    || |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  28326969 tacttcatggagttaccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgct 28326870  T
Q  320 catctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctat 419  Q
    ||||||  |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||  |||| ||| |||||||||||| |||||| ||||    
T  28326869 catcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactat 28326770  T
Q  420 attctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatcc 519  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||  || || |||||||||||     
T  28326769 attctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaaaatttgaatcg 28326670  T
Q  520 atcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
    |  || ||||||||||||| |||| ||||||||||||||||||||||  ||| | |||||||||| | |||||||    
T  28326669 actttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatat 28326595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 28504805 - 28504231
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttc 119  Q
    ||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||| |||  | ||||||| || ||| | |||| ||     ||||||||    
T  28504805 tattcaccttactttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttc 28504706  T
Q  120 tttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactgatttga 219  Q
    |||||| |||| ||| || ||| ||||||| || | |  |  | |||||  | ||  || |||||| |||||||||||||||  ||||||||||||||||    
T  28504705 tttacctatttgctccattaaggcatgtaatgtaagataactagtctcccagaactggttgatcttgatgagagatttttcaagcaacacactgatttga 28504606  T
Q  220 tatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgct 319  Q
    || |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  28504605 tacttcatggagttaccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgct 28504506  T
Q  320 catctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctat 419  Q
    ||||||  |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||  |||| ||| |||||||||||| |||||| ||||    
T  28504505 catcttcatccaaagcatcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactat 28504406  T
Q  420 attctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatcc 519  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||  || || |||||||||||     
T  28504405 attctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaatgccgtcaaaatttgaatcg 28504306  T
Q  520 atcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatat 594  Q
    |  || ||||||||||||| |||| ||||||||||||||||||||||  ||| | |||||||||| | |||||||    
T  28504305 actttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatat 28504231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 214 - 582
Target Start/End: Complemental strand, 28182606 - 28182247
Alignment:
Q  214 atttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacat 313  Q
    ||||||| |||||||||| ||||||||| |||||||| ||||||||||| ||||||||| | ||||||||| ||| | |||| |||||| ||||||||||    
T  28182606 atttgatgtttcatgcagctaccataatgagcatgaaatatatcttcaacttctttcaaatcatatccttttaagaaacaagaaatgtccagaaaaacat 28182507  T
Q  314 tctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattc 413  Q
    |||||||||| | ||||| ||||||| |||| |||||||||||||| || |||||||| || ||||||||| |         ||||||||||||| ||||    
T  28182506 tctgctcatcatcctccagagcatcatagctaactttaagtatctcttggatctttttcatgggaatccttgt---------taatgcagatttcgattc 28182416  T
Q  414 tcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaattt 513  Q
    ||  |||||||||||||| ||||| |||||||||||||||||||||||||||||| | || ||| ||||||||||     ||||||   | || |||||     
T  28182415 tctcatattctttccaaacaagttggaacccactacttctaaagccaatggaaggactgatgcaaaagttactgcttggtgtaaaatgacgtcaaaattc 28182316  T
Q  514 gaatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaactta 582  Q
    | ||| |  || ||| ||||||||| |  | ||||||||||||||||||||||  ||||||||||||||    
T  28182315 gcatcaactttgttaattttgaaagcagaccacctcaacaattcaagagcttctttctcatttaactta 28182247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 328 - 582
Target Start/End: Complemental strand, 28228335 - 28228081
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    ||||||| ||||||||||| ||||||||||||    || |||||||| |||||||||   | | ||| ||||||||||||||||||| | |||||||| |    
T  28228335 tccaaagtatcaaagcttattttaagtatctctatgatatttttaatgggaatcctttcttcctgatttaatgcagatttccattcttcaatattcttcc 28228236  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttatt 527  Q
    |||| |||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||| || |||||||  |||||||||||||| | | | ||    
T  28228235 caaacaagtttgaacccactacttctaaaaccaatggaatgccaaaagaaaaagttactgcacaccgcaaaacacggtcgaaatttgaatcgaccatgtt 28228136  T
Q  528 atttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaactta 582  Q
    || ||||||||  ||| |||||| |||||||||||||||| ||||||||||||||    
T  28228135 atatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaactta 28228081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 204 - 490
Target Start/End: Complemental strand, 28141042 - 28140756
Alignment:
Q  204 caacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcg 303  Q
    |||||| || || |||||||||||||| | ||| |||| |||||  || ||||||||||  |||   ||| |||||||| |||| || ||||||||||||    
T  28141042 caacactctaatatgatatttcatgcattcaccgtaatgagcatagagaatatcttcaacctctgctaatatatatcctctgaaacaacaagcaatgtcg 28140943  T
Q  304 agaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcag 403  Q
    ||||||||| | ||||||||||||||||||  ||||||||| ||||||||||||| | | | || ||||   |||||||||  |||||||||||||| ||    
T  28140942 agaaaaacactttgctcatctttctccaaactatcaaagctcactttaagtatcttcaggacctctttatgaggaatcctttcataccgatctaatgtag 28140843  T
Q  404 atttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    ||||||| ||  || ||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  28140842 atttccactcatctttatgctttccaaacaagctagaaccaactacttctaaagccaatggaaggccagaggcataagtaactgcac 28140756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 181 - 490
Target Start/End: Original strand, 29842644 - 29842953
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    ||||||||||||| ||||||  ||||||| |  || |||||||  ||||| | ||||| || ||||  ||| ||||||||||  |||  ||| | ||| |    
T  29842644 atctttatgagagttttttcgaccaacactccaatatgatattctatgcattgaccatgataagcacaaagaatatcttcaacctctcccaaatcatacc 29842743  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||||| |||||||||||||||||||||   || || |||| |||||||||||||||||||| ||||||||| |  || |||| |||| | |||||    
T  29842744 ctttgaagcaacaagcaatgtcgagaaaaacaccttgttcgtcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaat 29842843  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataa 480  Q
    ||||  ||||| |||||||| ||||||||||||| |||||||||||||||| ||   || ||| |||| ||||||| |||| ||||||||||||||||||    
T  29842844 cctttcatacctatctaatgtagatttccattcttctatattctttccaaacaaagctggacctactaattctaaaaccaacggaaggccagaagcataa 29842943  T
Q  481 gttactgcac 490  Q
    | || |||||    
T  29842944 gctattgcac 29842953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 286 - 491
Target Start/End: Complemental strand, 28240778 - 28240577
Alignment:
Q  286 aagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttc 385  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||  || |||| |||| | |||||||||     
T  28240778 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 28240683  T
Q  386 tataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttac 485  Q
     |||| | |||||||  |||| ||||||||||||||    |||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||     
T  28240682 catactggtctaatgtggattcccattctcctatatctaatccaaacaagttggaaccaactacttctaaagctaatggtaggccagaagcataagttat 28240583  T
Q  486 tgcaca 491  Q
    ||||||    
T  28240582 tgcaca 28240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 248 - 479
Target Start/End: Complemental strand, 26647942 - 26647711
Alignment:
Q  248 gaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttac 347  Q
    |||||||||||||||  || | | || || ||||||||||||| ||||||||||| ||||| ||| ||||||  |||| ||||||||||||| |||||||    
T  26647942 gaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttac 26647843  T
Q  348 tttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccact 447  Q
    |||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||| ||||||| |||||||||    
T  26647842 tttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccatataagttggaacccact 26647743  T
Q  448 acttctaaagccaatggaaggccagaagcata 479  Q
    | ||||||| | || |||||||| ||||||||    
T  26647742 atttctaaaactaagggaaggcctgaagcata 26647711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 248 - 479
Target Start/End: Complemental strand, 26753910 - 26753679
Alignment:
Q  248 gaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttac 347  Q
    |||||||||||||||  || | | || || ||||||||||||| ||||||||||| ||||| ||| ||||||  |||| ||||||||||||| |||||||    
T  26753910 gaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttac 26753811  T
Q  348 tttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccact 447  Q
    |||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||| ||||||| |||||||||    
T  26753810 tttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccatataagttggaacccact 26753711  T
Q  448 acttctaaagccaatggaaggccagaagcata 479  Q
    | ||||||| | || |||||||| ||||||||    
T  26753710 atttctaaaactaagggaaggcctgaagcata 26753679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 236 - 479
Target Start/End: Original strand, 27704961 - 27705204
Alignment:
Q  236 cataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagc 335  Q
    |||||| || ||||||||||| |||||  ||| ||||| |||| ||||| ||||| ||||||||||| ||||| ||| ||||||| ||||  ||||||||    
T  27704961 cataatgagaatgaagtatattttcaacctctgtcaatctatacccttttaagcaacaagcaatgtcaagaaagacactctgctcctcttcttccaaagc 27705060  T
Q  336 atcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataag 435  Q
    |||| |||| ||| |||||||||  || |||| |||| | ||||||||   ||||| |||||||| |   ||||||||| |||| ||||| ||||| |||    
T  27705061 atcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtattcttccattcttctatgttcttgccaaacaag 27705160  T
Q  436 tttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    || ||||||| |||||||||| | || |||||||||||||||||    
T  27705161 ttagaacccattacttctaaaactaacggaaggccagaagcata 27705204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 280 - 490
Target Start/End: Complemental strand, 29827417 - 29827207
Alignment:
Q  280 cctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 379  Q
    ||||||||||| |||||||||||||||||||||   || ||||||| ||||||||||||||| |||| ||||||||| |  || |||| |||| | ||||    
T  29827417 cctttgaagcaacaagcaatgtcgagaaaaacaccttgttcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaa 29827318  T
Q  380 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||  ||| | |||||||  ||||||||||||| |||||||||||||||| ||    | ||| |||| ||||||| |||| |||||||||||||||||    
T  29827317 tcctttcatatctatctaatatagatttccattcttctatattctttccaaacaacgcgggacctactaattctaaaaccaacggaaggccagaagcata 29827218  T
Q  480 agttactgcac 490  Q
    || || |||||    
T  29827217 agctattgcac 29827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 278 - 475
Target Start/End: Complemental strand, 31285992 - 31285795
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||||| ||||  |||||||||||| ||||||||||||||||||  || |||| |||| | ||    
T  31285992 atcctttgaagcaacaagcaatgtccagaaagacactctgctcctcttcttccaaagcatcatagcttactttaagtatcttttggatctctttattggg 31285893  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaag 475  Q
    |||| |   ||||| |||||||| |   ||||||| | ||||  |||||||||| |||||||||||||||||||||| | | ||||||||||||||||    
T  31285892 aatcttgtcatacccatctaatgtactcttccatttttctatgctctttccaaacaagtttgaacccactacttctataactaatggaaggccagaag 31285795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 595 - 690
Target Start/End: Original strand, 14958902 - 14958997
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 690  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  14958902 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacggttgttgcggctgtt 14958997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 236 - 479
Target Start/End: Complemental strand, 27680425 - 27680182
Alignment:
Q  236 cataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagc 335  Q
    |||||| ||||  |||||||||||| |  || ||| ||| ||||||||||||||||||||| ||||| ||||| ||| ||||||| ||||  ||||||||    
T  27680425 cataatgagcacaaagtatatcttcgaactccttccattgatatcctttgaagcagcaagcgatgtcaagaaagacactctgctcctcttcttccaaagc 27680326  T
Q  336 atcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataag 435  Q
    |||| |||| || ||||||||||  || |||| |||| | ||||||||   ||||| |||||||| |   ||||| ||| ||||  |||||||||| |||    
T  27680325 atcatagctcaccttaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtatgcttccaatcttctatgctctttccaaacaag 27680226  T
Q  436 tttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    || |||||||||||||||||| | || ||||||||| |||||||    
T  27680225 ttagaacccactacttctaaaactaacggaaggccaaaagcata 27680182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 235 - 490
Target Start/End: Complemental strand, 28787714 - 28787459
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||| |||||||||||||||  || | | | | | ||||||||||||| || |||||||| ||||||||| | || |  |||| ||||||||    
T  28787714 ccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcctccaaag 28787615  T
Q  335 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 434  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||| | |   ||||||||| ||||  |||||||||| ||    
T  28787614 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttccaaacaa 28787515  T
Q  435 gtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||||  |||||||    
T  28787514 gttggaacccactatttctaaaactaagggaaggcccgaagcataagaaactgcac 28787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 181 - 479
Target Start/End: Complemental strand, 26803976 - 26803678
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    ||||| ||||||||||||||| ||||||| |  |  |||| | | ||||| |  ||||||| | ||||||||||||||||||  || | | ||  | |||    
T  26803976 atcttaatgagagatttttcagccaacactcctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatc 26803877  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||||| ||||||||||| ||||| ||| ||||||  |||| ||||||||||||| ||||||||||||||||||| || ||||||||| | |||||    
T  26803876 ctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaat 26803777  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | ||  ||| | |||||||| |   |||||||||  |||  |||||||||| ||||| ||||||||||  |||||| | || ||||| || ||||||||    
T  26803776 cttttcatatccatctaatgtacccttccattcttttatgctctttccaaacaagttggaacccactatctctaaaactaagggaagacctgaagcata 26803678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 274 - 479
Target Start/End: Original strand, 27609865 - 27610070
Alignment:
Q  274 ttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaa 373  Q
    ||||||||||||||||| ||||||||||| ||||| ||| | ||||| ||||  ||||||| |||| |||| |||||||||||||  || |||| ||||     
T  27609865 ttatatcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagaatcatagctcactttaagtatcttttggatctctttat 27609964  T
Q  374 tcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 473  Q
    | ||||||||   ||||| |||||||| | | ||||||||  |||| ||||||||||| ||||| |||||||||| ||||| | | || |||||||||||    
T  27609965 tgggaatcctgtcatacccatctaatgtatacttccattcctctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccaga 27610064  T
Q  474 agcata 479  Q
    ||||||    
T  27610065 agcata 27610070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 235 - 479
Target Start/End: Complemental strand, 28793835 - 28793591
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||| |||||||||||||||  || | | | | | ||||||||||||| || |||||||| ||||||||| | || |  |||| ||||||||    
T  28793835 ccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcctccaaag 28793736  T
Q  335 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 434  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||| | |   ||||||||| ||||  |||||||||| ||    
T  28793735 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttccaaacaa 28793636  T
Q  435 gtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||    
T  28793635 gttggaacccactatttctaaaactaagggaaggcccgaagcata 28793591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 593 - 704
Target Start/End: Original strand, 8877824 - 8877934
Alignment:
Q  593 atcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttag 692  Q
    |||||||||||||||   | |||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  8877824 atcactacaagaaaataaggaaattgcgacacttcatctgcgacccatgccttgcaactgcctcaaa-tgcatttttgcaacagttgttgcggctgtttg 8877922  T
Q  693 ggtgaaccgtcg 704  Q
     |||||| ||||    
T  8877923 agtgaactgtcg 8877934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 235 - 479
Target Start/End: Original strand, 27603410 - 27603654
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||| |||||||||||||||   ||| ||||  | ||||||||||||| ||||||||||| ||||| ||| ||||||  |||| ||||||||    
T  27603410 ccataatgagcacgaagtatatcttcaaccacttccaatccacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaag 27603509  T
Q  335 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttct-ataccgatctaatgcagatttccattctcctatattctttccaaata 433  Q
    ||||| ||||||||||||| ||||| || ||||||||| | ||||| ||||| ||| |  ||||| | |   ||||||||| ||||  |||||||||| |    
T  27603510 catcatagcttactttaagaatctcgtggatctttttattgggaat-cttctcatatccttctaacgtacccttccattcttctatcctctttccaaaca 27603608  T
Q  434 agtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||| |||||||||||||| ||| | || ||||| || ||||||||    
T  27603609 agttggaacccactacttccaaaactaagggaagtcctgaagcata 27603654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 190 - 490
Target Start/End: Original strand, 28097104 - 28097404
Alignment:
Q  190 agagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagc 289  Q
    |||||||||| | ||||||| |  || |||||| ||||||  | ||| |||| ||||  ||| |||||||| |  |||||||||||||| ||||||||||    
T  28097104 agagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagc 28097203  T
Q  290 agcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctata 389  Q
    | ||||||||||||||||||||| ||  |||||||| ||||||||||||||| || ||   |||||| |  || |||| || | | ||||| |||  |||    
T  28097204 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcata 28097303  T
Q  390 ccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgca 489  Q
     ||||| ||   ||| ||||||||| |||||| ||||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| ||||    
T  28097304 tcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgca 28097403  T
Q  490 c 490  Q
    |    
T  28097404 c 28097404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 272 - 479
Target Start/End: Original strand, 27717242 - 27717449
Alignment:
Q  272 atttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 371  Q
    ||||| ||| ||||||||| ||||||||||| ||||| ||| | ||||  |||| ||||||||||||| | ||||||||||||||||  || |||| |||    
T  27717242 atttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctcttt 27717341  T
Q  372 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 471  Q
    | | ||||||||   ||||| |||||||| |   ||||||||  |||| ||||||||| ||||||| |||||||||| ||||| | | || |||||||||    
T  27717342 attgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggcca 27717441  T
Q  472 gaagcata 479  Q
    ||||||||    
T  27717442 gaagcata 27717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 278 - 479
Target Start/End: Complemental strand, 26624704 - 26624503
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    |||||||  |||| |||||||| || ||||| ||| ||||||| ||||  |||||||||||| |||| |||||||||||||  || |||| |||| | ||    
T  26624704 atcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattggg 26624605  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 477  Q
    ||||||   ||||| |||||||| | | ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||||    
T  26624604 aatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagca 26624505  T
Q  478 ta 479  Q
    ||    
T  26624504 ta 26624503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 278 - 479
Target Start/End: Complemental strand, 26730681 - 26730480
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    |||||||  |||| |||||||| || ||||| ||| ||||||| ||||  |||||||||||| |||| |||||||||||||  || |||| |||| | ||    
T  26730681 atcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctctttattggg 26730582  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 477  Q
    ||||||   ||||| |||||||| | | ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||||    
T  26730581 aatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttctaaaactaacggaaggccagaagca 26730482  T
Q  478 ta 479  Q
    ||    
T  26730481 ta 26730480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 279 - 479
Target Start/End: Original strand, 27697336 - 27697536
Alignment:
Q  279 tcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgga 378  Q
    |||||||||||| ||||||||||| ||||| ||| | ||||| ||||  |||||||||||| |||| ||| |||||||||  || |||| |||| | |||    
T  27697336 tcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattggga 27697435  T
Q  379 atccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcat 478  Q
    |||||   ||||| |||||||  | | ||||||||| |||| ||||||||||| ||||| |||||||||| ||||| | | || |||||||||||| |||    
T  27697436 atcctgtcatacccatctaatatatacttccattcttctatgttctttccaaacaagttagaacccactatttctataactaacggaaggccagaaacat 27697535  T
Q  479 a 479  Q
    |    
T  27697536 a 27697536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 181 - 479
Target Start/End: Complemental strand, 26885597 - 26885299
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    ||||||| ||||||||||||  ||||||| |  |  |||| ||| ||||| |  ||||||| |||||||||||||||||| |  ||| || ||||| | |    
T  26885597 atctttaagagagatttttcgaccaacactccaacatgatgttttatgcaatggccataatgagcatgaagtatatcttcgacctctgtccatttacacc 26885498  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||||| ||||| || || ||||| ||| | ||||| |||| ||| ||||||||| ||||||||||||||||||| || |||||| || | |||||    
T  26885497 ctttgaagcaacaagctatatccagaaagacactttgctcctcttcctctaaagcatcatagcttactttaagtatctcttggatctttgtattaggaat 26885398  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | ||  ||| | ||||| || |   ||||||  | ||||  |||||||||| ||||| |||||||||| ||||| | | || |||||||| ||||||||    
T  26885397 cttttcatatccatctagtgtactcttccatgtttctatgctctttccaaacaagttggaacccactatttctataactaaaggaaggcccgaagcata 26885299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 234 - 481
Target Start/End: Original strand, 27426317 - 27426564
Alignment:
Q  234 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaa 333  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||||||||||| ||||| ||| | ||||| |||| |||||||    
T  27426317 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 27426416  T
Q  334 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 433  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
T  27426417 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 27426516  T
Q  434 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 481  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
T  27426517 agttagaacccactatttctataactaccggaaggccagaagcataag 27426564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 246 - 479
Target Start/End: Original strand, 27676337 - 27676570
Alignment:
Q  246 atgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctt 345  Q
    ||||||||| | ||| | ||||| |||| || ||||||||| ||| |||||||| || | ||| ||| ||||||| ||||  |||||||||||| ||||     
T  27676337 atgaagtatctgttcgacttcttccaatctacatcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcgtccaaagcatcatagctc 27676436  T
Q  346 actttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaaccca 445  Q
    | | |||||||||  || || | ||||   ||||| |||| ||||  |||||||| ||| |  |||||| | ||| |||||||||| ||||| |||||||    
T  27676437 agtctaagtatcttttggatatctttatgtggaattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaagttagaaccca 27676536  T
Q  446 ctacttctaaagccaatggaaggccagaagcata 479  Q
    |||||||||  || ||||||||||||||||||||    
T  27676537 ctacttctatcgctaatggaaggccagaagcata 27676570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 28235802 - 28235694
Alignment:
Q  474 agcataagttactgcacaacgtaaaacaccatcgaaatttgaatccatcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctca 573  Q
    |||||||||||||||||| |  |||||||| | |||||||||||| | ||| |||| ||| ||||  ||| ||||||||||||||||||||||| |||||    
T  28235802 agcataagttactgcacacctcaaaacaccgttgaaatttgaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctca 28235703  T
Q  574 tttaactta 582  Q
    |||||||||    
T  28235702 tttaactta 28235694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 328 - 479
Target Start/End: Complemental strand, 26951126 - 26950975
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||  ||| |  |||||| ||||| ||||||    
T  26951126 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaataaagactcacattctgctatagtctttc 26951027  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  26951026 caaacaagttagaacccactacttctaaagctaatggaaggccagcagcata 26950975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 328 - 479
Target Start/End: Complemental strand, 26978763 - 26978612
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    |||||||||||||||||||||||||||||||  || || | || |   ||||| |||| ||||  |||||||  ||| |  || ||| ||||| ||||||    
T  26978763 tccaaagcatcaaagcttactttaagtatcttttggatatgttcaggtggaattcttccatacttatctaatatagactcacactctgctatactctttc 26978664  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||| ||| |||||||||||||||||||||| |||||||| |||||||||||    
T  26978663 caaacaagcttgaacccactacttctaaagctaatggaagaccagaagcata 26978612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 26636948 - 26636878
Alignment:
Q  409 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26636948 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26636878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 26742914 - 26742844
Alignment:
Q  409 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26742914 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26742844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 26850014 - 26849944
Alignment:
Q  409 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26850014 cattcttctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26849944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 278 - 479
Target Start/End: Original strand, 27591770 - 27591971
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    ||||||||| ||| |||||||| || | ||| ||| ||||||| ||||  |||||||||||| |||| | | |||||||||  || || | ||||   ||    
T  27591770 atcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcttccaaagcatcatagctgagtctaagtatcttttggatatctttatgtgg 27591869  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 477  Q
    ||| |||| ||||  |||||||| ||| |  |||||| | ||| |||||||||| ||||| ||||||||||||||||  || ||||||||||||||||||    
T  27591870 aattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaagttagaacccactacttctatcgctaatggaaggccagaagca 27591969  T
Q  478 ta 479  Q
    ||    
T  27591970 ta 27591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 272 - 479
Target Start/End: Complemental strand, 29469651 - 29469444
Alignment:
Q  272 atttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 371  Q
    |||||||||||||||||||||| |||||||| |||||||||  || ||| |||| || ||||||||||||||| | ||  ||||||   || ||||||||    
T  29469651 atttatatcctttgaagcagcaggcaatgtcaagaaaaacagacttctcttcttcctgcaaagcatcaaagctaagttgtagtatcgtttggatcttttt 29469552  T
Q  372 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 471  Q
    |   |||||||||  ||| |||||||||||| |||| |||| | | ||  ||||   ||| ||||  ||||| |  ||||| ||||||| ||||||||||    
T  29469551 atcaggaatcctttcataacgatctaatgcatatttacattgttcaattgtcttattaaaaaagtgagaacctatgacttccaaagccagtggaaggcca 29469452  T
Q  472 gaagcata 479  Q
    ||||||||    
T  29469451 gaagcata 29469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 181 - 479
Target Start/End: Complemental strand, 26657492 - 26657194
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    |||| |||||||||||||||| ||||||| |  |  |||| ||| ||||| | |||||| | |||| ||||| | ||||| |  ||  ||||| || |||    
T  26657492 atctctatgagagatttttcaaccaacactccaacatgatgttttatgcaatgaccatagtgagcaagaagtgtctcttcgacctcactcaatctacatc 26657393  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||  | ||||| || || | ||| ||| | ||||| |||| ||||||| ||||| ||||||||||||||||||| || ||||||||| | |||||    
T  26657392 ctttgaaaaaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaat 26657293  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | ||  ||| | |||||||| |   ||||||| | | ||  |||||||||| ||||||||| |||||||||||| | | || ||||| || ||||||||    
T  26657292 cttttcatatccatctaatgtactcttccatttttcgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcata 26657194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 181 - 479
Target Start/End: Complemental strand, 26763463 - 26763165
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    |||| |||||||||||||||| ||||||| |  |  |||| ||| ||||| | |||||| | |||| ||||| | ||||| |  ||  ||||| || |||    
T  26763463 atctctatgagagatttttcaaccaacactccaacatgatgttttatgcaatgaccatagtgagcaagaagtgtctcttcgacctcactcaatctacatc 26763364  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||  | ||||| || || | ||| ||| | ||||| |||| ||||||| ||||| ||||||||||||||||||| || ||||||||| | |||||    
T  26763363 ctttgaaaaaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattgggaat 26763264  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | ||  ||| | |||||||| |   ||||||| | | ||  |||||||||| ||||||||| |||||||||||| | | || ||||| || ||||||||    
T  26763263 cttttcatatccatctaatgtactcttccatttttcgatgctctttccaaacaagtttgaagccactacttctataactaagggaagtcctgaagcata 26763165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 26960427 - 26960357
Alignment:
Q  409 cattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||| ||||| |||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26960427 cattctgctatactcttgccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcata 26960357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 278 - 479
Target Start/End: Original strand, 27663963 - 27664164
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    ||||||||||||| |||||||| || | ||| ||| |||| |  ||||  ||||||| |||||||||||||||||||||||  || || | || |   ||    
T  27663963 atcctttgaagcaacaagcaatatccaaaaagacactctgttgttcttcttccaaagtatcaaagcttactttaagtatcttttggatatcttcaggtgg 27664062  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 477  Q
    ||| |||  ||||  |||||| |  || |  || ||| ||||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||    
T  27664063 aattctttcatacttatctaaggttgactcacaatctgctatactctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagca 27664162  T
Q  478 ta 479  Q
    ||    
T  27664163 ta 27664164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 595 - 704
Target Start/End: Complemental strand, 33596524 - 33596415
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    ||||||||||||| | |||||||| ||||||||||||||||||| ||||||  |||||||||||| || |  |||||||| ||||||||  ||||| |||    
T  33596524 cactacaagaaaatcagcaaattgtgacacttcatctgcgacccctaccttataactgcctcaaaatgaacatttgcaacggttgttgcaactgtttggg 33596425  T
Q  695 tgaaccgtcg 704  Q
    | ||| ||||    
T  33596424 tcaactgtcg 33596415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 28235881 - 28235809
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctc 92  Q
    ||||||||| |||| ||||||||||||||||||||||||||  |||||||||||| ||| ||||||| |||||    
T  28235881 tattcaccttatttgcttctaagacatcaattatatctttacagaaccacaacctactacgtcttcctggctc 28235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 393 - 488
Target Start/End: Complemental strand, 26812846 - 26812751
Alignment:
Q  393 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgc 488  Q
    |||||||| ||||| ||| ||| | ||| |||||||||| ||||| |||||||||||||||| ||| |||||||||||||||| |||  |||||||    
T  26812846 atctaatgtagattcccactcttcaatactctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagtatattttactgc 26812751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 28096953 - 28097080
Alignment:
Q  30 attttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccatt 129  Q
    |||||||||||| || | || |||||||| ||||||| ||||||||||| || ||||||| || ||||| |||| ||   | |||||||||||||||||     
T  28096953 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 28097052  T
Q  130 ttctctatcaagacatgtaacgtcacaa 157  Q
    |  ||||||||| ||||||| |||||||    
T  28097053 tcttctatcaagtcatgtaatgtcacaa 28097080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 281 - 479
Target Start/End: Complemental strand, 26825249 - 26825051
Alignment:
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||||| |||||||||||||| |||||| | || |  ||||  |||||||||||| |||||||| |||||||||| || ||||||||    |||||    
T  26825249 ctttgaagcaacaagcaatgtcgaggaaaacactttgttgctcttcttccaaagcatcatagcttactctaagtatctcttggatctttttgtcaggaat 26825150  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||||  ||| | ||||||||||   ||||||  |  |||  |||||||||| || || |||||||||| ||||||  | || |||||||| ||||||||    
T  26825149 cctttcatatccatctaatgcacccttccatatttgtatgctctttccaaacaaattggaacccactatttctaatactaagggaaggcccgaagcata 26825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 27530009 - 27530131
Alignment:
Q  234 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaa 333  Q
    |||||||| |||||||||||| ||||  |  |||  | ||||| | ||||||||||| ||||||||||| ||||| ||| | ||||| ||||||||||||    
T  27530009 accataatgagcatgaagtatttctttgacctctggccatttacaccctttgaagcaacaagcaatgtctagaaagacactttgctcttctttctccaaa 27530108  T
Q  334 gcatcaaagcttactttaagtat 356  Q
    | |||| |||| |||||||||||    
T  27530109 gaatcatagctcactttaagtat 27530131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 473
Target Start/End: Complemental strand, 2186356 - 2186064
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    ||||||||||| ||||||||| ||||||| |  || |||| ||| ||||| | |  ||||| ||||| |||||||||||  |  |||| || | || |||    
T  2186356 atctttatgagtgatttttcaaccaacactccaatatgatttttgatgcaataagtataatgagcatcaagtatatcttggaactcttccagtctacatc 2186257  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||  | ||||||||||||||||| | | |||  || || | || ||||||||||||||| |||||||||||||  || || ||||||     | |    
T  2186256 ctttgaaaaaacaagcaatgtcgagaaagagactcttatcttcctcctgcaaagcatcaaagctgactttaagtatctgttggatgtttttaggaacagt 2186157  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 473  Q
    ||||  ||| ||| | |||| |||  |||||||  || ||  ||||||| | ||||  |||||||||||||||||||| ||||||||||||||    
T  2186156 cctttcatatcgagccaatgtagaactccattcgtctttagactttccagacaagtcagaacccactacttctaaagctaatggaaggccaga 2186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 280 - 479
Target Start/End: Complemental strand, 26863011 - 26862812
Alignment:
Q  280 cctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 379  Q
    |||||||| || |||||||| || ||||| ||| | ||||  ||||  |||||||||||| |||||||||||||||||   || |||| |||| | ||||    
T  26863011 cctttgaaacaacaagcaatatctagaaagacactttgctgctcttcttccaaagcatcatagcttactttaagtatcctttggatctctttattgggaa 26862912  T
Q  380 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    || ||  ||||| ||||||||   ||| ||||||| | ||  |||||||||| ||||| |||||||||| ||| | | | || |||||||| ||||||||    
T  26862911 tcttttcatacccatctaatgtgcattgccattcttccatgctctttccaaacaagttagaacccactatttcgagaactaacggaaggccggaagcata 26862812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 25075153 - 25075099
Alignment:
Q  425 ttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  25075153 ttccaaacaagttggaacccacaacttctaaagctaatggaaggccagaagcata 25075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 2186474 - 2186369
Alignment:
Q  51 tatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccattttctctatcaagacatgtaac 150  Q
    |||||||| |||| |||||||||| ||| || |||||||||| ||||| |||| ||     || |||||||||||||||| |||||||||| |||||||     
T  2186474 tatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatttcctctatcaagtcatgtaat 2186375  T
Q  151 gtcaca 156  Q
    ||||||    
T  2186374 gtcaca 2186369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 797
Target Start/End: Original strand, 14959050 - 14959102
Alignment:
Q  745 ttttcattccccgctttaccaaaatttcgttcccccatttctcactttcccaa 797  Q
    |||||||||||||||| |||||||||||  |||||| ||||||||||||||||    
T  14959050 ttttcattccccgcttaaccaaaatttcactcccccctttctcactttcccaa 14959102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 357
Target Start/End: Complemental strand, 25512416 - 25512245
Alignment:
Q  186 tatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttg 285  Q
    |||||||||||||||| ||||||| |  |  |||| ||  ||||| |  ||||||| |||||||||||| | ||  | || | || ||||||| ||||||    
T  25512416 tatgagagatttttcagccaacactccaacatgatgttctatgcaatggccataatgagcatgaagtattttttttacttttgtccatttataccctttg 25512317  T
Q  286 aagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatc 357  Q
    ||| | ||||||||||| ||||| ||| |||| || | || || |||||||||| ||||||||| |||||||    
T  25512316 aagtaacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatc 25512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 25484535 - 25484413
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||||||||||| | ||  | || | || ||||||| ||||||||| | ||||||||||| ||||| ||| |||| || | || || |||||    
T  25484535 ccataatgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtctagaaagacactctgatccttttccttcaaag 25484436  T
Q  335 catcaaagcttactttaagtatc 357  Q
    ||||| ||||||||| |||||||    
T  25484435 catcatagcttacttgaagtatc 25484413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 26057398 - 26057276
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||||||||||| | || ||  | | || ||||| | ||||||||||| ||||||||||| ||||| ||| |||| || | || || |||||    
T  26057398 ccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaag 26057299  T
Q  335 catcaaagcttactttaagtatc 357  Q
    ||||| ||||||||| |||||||    
T  26057298 catcatagcttacttgaagtatc 26057276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 26077368 - 26077246
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||||||||||| | || ||  | | || ||||| | ||||||||||| ||||||||||| ||||| ||| |||| || | || || |||||    
T  26077368 ccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaag 26077269  T
Q  335 catcaaagcttactttaagtatc 357  Q
    ||||| ||||||||| |||||||    
T  26077268 catcatagcttacttgaagtatc 26077246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 27215928 - 27215806
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    |||||||  ||||||||||||||||  |  | | || ||||| | ||||||||||| ||||||||||| ||||| ||| ||| ||| | || ||||| ||    
T  27215928 ccataatgggcatgaagtatatctttgacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactcttctccttttcctccagag 27215829  T
Q  335 catcaaagcttactttaagtatc 357  Q
    ||||| |||| ||||||||||||    
T  27215828 catcatagctgactttaagtatc 27215806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 26144299 - 26144222
Alignment:
Q  280 cctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatc 357  Q
    ||||||||||| ||||||||||| ||||| ||| |||| || | || || |||||||||| ||||||||| |||||||    
T  26144299 cctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttcaaagcatcatagcttacttgaagtatc 26144222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 476
Target Start/End: Complemental strand, 26938345 - 26938264
Alignment:
Q  395 ctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagc 476  Q
    |||||| ||||| ||||||| |||||  ||||||||| || |  ||||| || ||||||||||| |||||||||||||||||    
T  26938345 ctaatgtagattcccattctgctatacactttccaaacaaatgggaacctacaacttctaaagctaatggaaggccagaagc 26938264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 29523336 - 29523255
Alignment:
Q  276 atatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatc 357  Q
    ||||||||||||||| ||| |||| |||||||||| | |||||  ||||||||| |||||||||||  |  |||||||||||    
T  29523336 atatcctttgaagcaacaaacaatatcgagaaaaatactctgcgtatctttctctaaagcatcaaatatatctttaagtatc 29523255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 28479024 - 28479152
Alignment:
Q  184 tttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctt 283  Q
    |||||||||||||||||  | ||||||   || |||| |||||||   |||||||||| |||||||||||| ||||| | |  | |||| ||  ||||||    
T  28479024 tttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccataatgagcatgaagtatttcttcgactcttatcaaattccatcctt 28479123  T
Q  284 tgaagcagcaagcaatgtcgagaaaaaca 312  Q
    ||| ||| ||||||||||| |||||||||    
T  28479124 tgaggcaacaagcaatgtcaagaaaaaca 28479152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 28490202 - 28490270
Alignment:
Q  244 gcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaaca 312  Q
    ||||||||||| ||||| | |  |||||||||  ||||||||||||| ||||||||||| |||||||||    
T  28490202 gcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 28490270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 29695041 - 29695169
Alignment:
Q  184 tttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctt 283  Q
    |||||||||||||||||  | ||||||   || |||| |||||||   |||||||||| |||||||||||| ||||| | |  | |||| ||  ||||||    
T  29695041 tttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccataatgagcatgaagtatttcttctactcttgtcaaattccatcctt 29695140  T
Q  284 tgaagcagcaagcaatgtcgagaaaaaca 312  Q
    ||| ||| ||||||||||| |||||||||    
T  29695141 tgaggcaacaagcaatgtcaagaaaaaca 29695169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 29791479 - 29791607
Alignment:
Q  184 tttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctt 283  Q
    |||||||||||||||||  | ||||||   || |||| |||||||   |||||||||| |||||||||||| ||||| | |  | |||| ||  ||||||    
T  29791479 tttatgagagatttttccactaacacatcaatgtgatctttcatgatattaccataatgagcatgaagtatttcttcgactcttatcaaattccatcctt 29791578  T
Q  284 tgaagcagcaagcaatgtcgagaaaaaca 312  Q
    ||| ||| ||||||||||| |||||||||    
T  29791579 tgaggcaacaagcaatgtcaagaaaaaca 29791607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 29802612 - 29802680
Alignment:
Q  244 gcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaaca 312  Q
    ||||||||||| ||||| | |  |||||||||  ||||||||||||| ||||||||||| |||||||||    
T  29802612 gcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 29802680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 29727699 - 29727770
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactt 349  Q
    ||||||||||||| ||||||||||| |||||||||  || ||| || | ||||| |||||||||||| ||||    
T  29727699 atcctttgaagcaacaagcaatgtcaagaaaaacaaacttctcttcgtcctccagagcatcaaagctcactt 29727770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 29476962 - 29477024
Alignment:
Q  426 tccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgc 488  Q
    |||||| ||| ||||||| | |||||| || ||||||||||| || |||||||||||||||||    
T  29476962 tccaaacaagcttgaacctattacttccaaggccaatggaagcccggaagcataagttactgc 29477024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #71
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 28228455 - 28228399
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgt-atctttttaatcggaatcctt 384  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||    
T  28228455 tccaaagcatcaaagcttattttaagtatct-ctgtgatatttttaatgggaatcctt 28228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 582
Target Start/End: Original strand, 56785 - 57347
Alignment:
Q  20 tattcacctgattttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttc 119  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| | ||    |||||||||    
T  56785 tattcaccttattttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttc 56884  T
Q  120 tttacccattttctctatcaagacatgtaacgtcacaacataattctcctcgtacctgtcgatctttatgagagatttttcatccaacacactgatttga 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||  | ||||||||||||||||||||||| |||||| || ||||||    
T  56885 tttacccattttctctatcaaggcatgtaacgtcacaacataattcccctggtaccatttgatctttatgagagatttttcatgcaacactctaatttga 56984  T
Q  220 tatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgct 319  Q
    | |||||||||| ||||||||| |||||||||||||||||||| |||||| || | | ||||||  ||| | |||| |||||||||||||||||||| ||    
T  56985 tgtttcatgcagctaccataatgagcatgaagtatatcttcaacttcttttaaatcacatccttctaagaaacaagaaatgtcgagaaaaacattcttct 57084  T
Q  320 catctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctat 419  Q
    |||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||  |||| ||| ||||||||||||||||||||||||    
T  57085 catcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatttccattctcctat 57184  T
Q  420 attctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcacaacgtaaaacaccatcgaaatttgaatcc 519  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    |||||||    |||||||||| ||      
T  57185 attctttccaaacaagttcgaacccactacttctaaggccaatggaaggcctgaagcataagttactgcaaggtgtaaaacgttgtcgaaatttggattg 57284  T
Q  520 atcttattatttttgaaagaattcaacctcaacaattcaagagcttcggtctcatttaactta 582  Q
    |  || ||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||||    
T  57285 actttgttatttttgaaagcattccacctcaacaattcaagagcttctttctcatttaactta 57347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 594 - 877
Target Start/End: Original strand, 27437912 - 27438188
Alignment:
Q  594 tcactacaagaaaaac--tgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtta 691  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27437912 tcactacaagaaaaacactgcaaattgcgacacttcatctgcgatccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtta 27438011  T
Q  692 gggtgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcactt 791  Q
    ||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27438012 gggtgaaccgtcgcaggtttttttgtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcactt 27438111  T
Q  792 tcccaacctcgcctgaaagagagagagaactcacaaaactcacaaatctccatcgcaaatctccactccatctccatcttcatctc 877  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27438112 tcccaacctcgcctgaaagagagagag---------aactcacaaatctccatcgcaaatctccactccatctccatctccatctc 27438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 593 - 797
Target Start/End: Original strand, 9775127 - 9775329
Alignment:
Q  593 atcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttag 692  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||| ||||||||||||||||      
T  9775127 atcactacaagaaaa-ctgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaatagttgttgcggctgtt-t 9775224  T
Q  693 ggtgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcacttt 792  Q
    | ||||||||||   |          | ||||||||||| ||||||| ||  |||||||||||||||| |||||||||||  |||||| |||||||||||    
T  9775225 gatgaaccgtcgcgagttttatttgatgattaattagaaggcgcgttataatttttcattccccgcttaaccaaaatttcactcccccctttctcacttt 9775324  T
Q  793 cccaa 797  Q
    |||||    
T  9775325 cccaa 9775329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 184 - 344
Target Start/End: Complemental strand, 615323 - 615163
Alignment:
Q  184 tttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctt 283  Q
    |||||||||||||||||  |||||||| | || |||| |||||||   | |||||||| |||||||||||| |||||||    | |||||||  ||||||    
T  615323 tttatgagagatttttccaccaacacattaatgtgatctttcatgatatcaccataatgagcatgaagtatttcttcaacccttgtcaatttccatcctt 615224  T
Q  284 tgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagct 344  Q
    ||||||| ||||||||||| |||||||||  ||  || ||||||| ||| |||||||||||    
T  615223 tgaagcaacaagcaatgtcaagaaaaacaaacttttcttctttctgcaaggcatcaaagct 615163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 6e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 604 - 797
Target Start/End: Original strand, 4103226 - 4103419
Alignment:
Q  604 aaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttagggtgaaccgtc 703  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4103226 aaaaactgcaaattgcgacacttcatctgcgacccttaccttacaactgcctcaaagtgcatttttgcaacagttgttgcggctgttagggtaaaccgtc 4103325  T
Q  704 gtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcactttcccaa 797  Q
    | |||       | |||||||||||||| | ||||||||  |||||||||| | |||||||||| |||||||||||| ||||||||||||||||    
T  4103326 gcaggtttttttggttaattaattagaaggggcgttgtacattttcattcctcactttaccaaattttcgttcccccttttctcactttcccaa 4103419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 181 - 485
Target Start/End: Original strand, 5089602 - 5089906
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    ||||||||||||||||| ||| |||||   |  || |||||||||||||| | |||||||| ||||  |||||||| ||| |  || | |||  ||||||    
T  5089602 atctttatgagagatttatcaaccaactttcctatatgatatttcatgcaataaccataatgagcacaaagtatatattcgacctcatccaagctatatc 5089701  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    ||||||| || |||||||||||||| |||||| ||||||||| ||   | |||  || |||||| ||| |||||||||  || || | |||| | |||||    
T  5089702 ctttgaaacaacaagcaatgtcgaggaaaacactctgctcatattcacctaaattattaaagctcactataagtatcttttggatttctttattaggaat 5089801  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataa 480  Q
    ||||  ||||  ||||| |  ||||||||||| | |||||| ||||||||| || || |||||||| |||||||||||||||||||||||||||||||||    
T  5089802 cctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaacttctaaagccaatggaaggccagaagcataa 5089901  T
Q  481 gttac 485  Q
    |||||    
T  5089902 gttac 5089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 234 - 481
Target Start/End: Complemental strand, 18075238 - 18074991
Alignment:
Q  234 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaa 333  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||||||||||| ||||| ||| | ||||| |||| |||||||    
T  18075238 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 18075139  T
Q  334 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 433  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
T  18075138 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 18075039  T
Q  434 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 481  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
T  18075038 agttagaacccactatttctataactaccggaaggccagaagcataag 18074991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 247 - 479
Target Start/End: Original strand, 18678274 - 18678506
Alignment:
Q  247 tgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctta 346  Q
    |||||||| ||||| | ||||  |||| || ||||||||||| | |||||||| || | ||| ||| | || |  ||||  |||||||||||||||||||    
T  18678274 tgaagtatctcttcgacttctgccaatctacatcctttgaagaaacaagcaatatccaaaaagacaatttgttgttcttcgtccaaagcatcaaagctta 18678373  T
Q  347 ctttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccac 446  Q
    ||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  ||||||   |||||||||||||| ||||| ||||||||    
T  18678374 ctttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagactcacattctgaaatattctttccaaacaagttggaacccac 18678473  T
Q  447 tacttctaaagccaatggaaggccagaagcata 479  Q
    |||||||| ||| ||||||||||||||||||||    
T  18678474 tacttctatagctaatggaaggccagaagcata 18678506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 329 - 479
Target Start/End: Original strand, 18722881 - 18723031
Alignment:
Q  329 ccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttcc 428  Q
    ||||||||||||||||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | ||| |||||||    
T  18722881 ccaaagcatcaaagcttactttaagtatcttttggatatcttcatctggaattctttcatacatatctaatgtagactcacattctgcaatactctttcc 18722980  T
Q  429 aaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  18722981 aaacaagttggaacccactacttctatagctaatggaaggccagaagcata 18723031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 247 - 479
Target Start/End: Original strand, 18698114 - 18698346
Alignment:
Q  247 tgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctta 346  Q
    |||||||| ||||||| ||||  |||  || ||||||||||| | |||||||| || | ||| ||| | || |  ||||  |||||||||||||||||||    
T  18698114 tgaagtatctcttcaacttctgccaaactacatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagctta 18698213  T
Q  347 ctttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccac 446  Q
    ||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | | | |||||||||| ||||| ||||||||    
T  18698214 ctttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagagtcacattctgcaaaactctttccaaacaagttggaacccac 18698313  T
Q  447 tacttctaaagccaatggaaggccagaagcata 479  Q
    |||||||| ||| ||||||||||||||||||||    
T  18698314 tacttctagagctaatggaaggccagaagcata 18698346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 247 - 479
Target Start/End: Original strand, 18730218 - 18730450
Alignment:
Q  247 tgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctta 346  Q
    |||||||| ||||| | ||||  |||| || ||||||||||| | |||||||| || | ||| ||| | || |  ||||  |||||||||||||||||||    
T  18730218 tgaagtatctcttcgacttctgccaatctacatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagctta 18730317  T
Q  347 ctttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccac 446  Q
    ||||||||||||  || || | || |   ||||| |||  ||||  |||||||| ||| |  |||||| | | | |||||||||| ||||| ||||||||    
T  18730318 ctttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagaatcacattctgcaaaactctttccaaacaagttggaacccac 18730417  T
Q  447 tacttctaaagccaatggaaggccagaagcata 479  Q
    |||||||| ||| ||||||||||||||||||||    
T  18730418 tacttctagagctaatggaaggccagaagcata 18730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 328 - 479
Target Start/End: Original strand, 18654272 - 18654423
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    |||||||||||||| ||||||||||||||||  || || | || |   ||||| |||  ||||  |||||||| |||||  |||||| | ||| ||||||    
T  18654272 tccaaagcatcaaaacttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaatgtagattcacattctgcaatactctttc 18654371  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||| ||||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  18654372 caaacaagttggaacccacgacttctatagctaatggaaggccagaagcata 18654423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 328 - 479
Target Start/End: Original strand, 18688421 - 18688572
Alignment:
Q  328 tccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttc 427  Q
    |||||||||||||||||||||||||||||||  || || | ||   | ||||| |||  ||||  |||||||| ||| |  ||||||   ||| ||||||    
T  18688421 tccaaagcatcaaagcttactttaagtatcttttggatatcttcgtttggaattctttgatacttatctaatgtagactcacattctgaaatactctttc 18688520  T
Q  428 caaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  18688521 caaacaagttggaacccactacttctatagctaatggaaggccagaagcata 18688572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 595 - 786
Target Start/End: Original strand, 15327849 - 15328039
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||      
T  15327849 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaaca-ttgttgcggctgttagca 15327947  T
Q  695 tgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttct 786  Q
    |||||||||| ||        | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  15327948 tgaaccgtcgcagatttttttggttaattaattagaaggcgcgttgtatattttcattccccgctttaccaaattttcgttcccccctttct 15328039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 595 - 786
Target Start/End: Original strand, 15508218 - 15508408
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||      
T  15508218 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaaca-ttgttgcggctgttagca 15508316  T
Q  695 tgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttct 786  Q
    |||||||||| ||        | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  15508317 tgaaccgtcgcagatttttttggttaattaattagaaggcgcgttgtatattttcattccccgctttaccaaattttcgttcccccctttct 15508408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 292 - 490
Target Start/End: Complemental strand, 31906473 - 31906275
Alignment:
Q  292 caagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctatacc 391  Q
    ||||| ||||| ||||||||| | | |||||||| ||||||||||||||| |||||||| ||||| |  || |||| |||| | |||||  ||  ||| |    
T  31906473 caagccatgtcaagaaaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatc 31906374  T
Q  392 gatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    ||| ||||||||||| |||||||  |||||||||||||||||| || ||||| |  |||   |||||||||||||| ||||||||||||  ||||||||    
T  31906373 gatgtaatgcagattcccattcttgtatattctttccaaataaattggaaccaataactatcaaagccaatggaagtccagaagcataacctactgcac 31906275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 292 - 490
Target Start/End: Complemental strand, 35984718 - 35984520
Alignment:
Q  292 caagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctatacc 391  Q
    ||||||||||| ||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||||  || || | |||| | |||||  ||  |||||    
T  35984718 caagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcatacc 35984619  T
Q  392 gatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    | | ||||||||||| ||| |||  ||   ||||||||||||| || ||||| | ||||   |||||||||||||| ||||||||||| | ||||||||    
T  35984618 ggtgtaatgcagattcccactcttgtactgtctttccaaataaattggaacctattactatcaaagccaatggaagtccagaagcatatgctactgcac 35984520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 479
Target Start/End: Original strand, 29272589 - 29272788
Alignment:
Q  280 cctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaa 379  Q
    ||||||||||| ||||||||||| ||||| ||| | || |  ||||  |||||||||||| | ||||||||||||||||  || ||| ||||| | ||||    
T  29272589 cctttgaagcaacaagcaatgtccagaaagacactttgttgctcttcttccaaagcatcataacttactttaagtatctggtggatccttttattgggaa 29272688  T
Q  380 tccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    || ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
T  29272689 tcttttcatatccatctaatgtacccttccattcttctatcctctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 29272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 16353696 - 16353779
Alignment:
Q  270 caatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaag 353  Q
    ||||||| |||||| ||| |||||||||||||| |||||||| |||| ||||||||  ||||| | | || |||||||||||||    
T  16353696 caatttacatccttcgaaacagcaagcaatgtcaagaaaaactttcttctcatcttcatccaaggaaacatagcttactttaag 16353779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 344
Target Start/End: Complemental strand, 12590268 - 12590108
Alignment:
Q  184 tttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctt 283  Q
    |||||||||||||||||  | |||||| | || ||||  ||||||   | ||||| || |||||||||||| ||||| |    | |||||||  ||||||    
T  12590268 tttatgagagatttttctgctaacacattaatgtgatcattcatgatatcaccatgatgagcatgaagtatttcttcgacccttgtcaatttccatcctt 12590169  T
Q  284 tgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagct 344  Q
    ||||||| |||||||| || |||||||||  || ||| |||| || |||||||||||||||    
T  12590168 tgaagcaacaagcaatatcaagaaaaacagacttctcttcttcctgcaaagcatcaaagct 12590108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 595 - 786
Target Start/End: Complemental strand, 27513831 - 27513641
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||      
T  27513831 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaaca-atgttgcggctgttagca 27513733  T
Q  695 tgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttct 786  Q
    |||||||||| ||        | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  27513732 tgaaccgtcgcagatttttttggttaattaattagaaggcgcgttgtatattttcattccccgctttaccaaattttcgttcccccctttct 27513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 274 - 488
Target Start/End: Complemental strand, 3281096 - 3280882
Alignment:
Q  274 ttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaa 373  Q
    ||||| ||||| ||||| ||||||||||||||||||||| | ||||| |||| ||||||||||||||| || ||||||||||||| ||| |||| ||||     
T  3281096 ttataccctttaaagcaacaagcaatgtcgagaaaaacactttgctcgtcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttat 3280997  T
Q  374 tcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccaga 473  Q
    | |||||||||  ||| ||||| ||   ||| ||||| |||  ||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||||||    
T  3280996 taggaatcctttcatatcgatccaacaaagaattccactcttttatattctttccaaacaagttggaacctaatacttctaatgccaatggaaggccaga 3280897  T
Q  474 agcataagttactgc 488  Q
    ||||||| |||||||    
T  3280896 agcataatttactgc 3280882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 738 - 797
Target Start/End: Complemental strand, 15729736 - 15729677
Alignment:
Q  738 ttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcactttcccaa 797  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  15729736 ttgtatattttcattccctgctttaccaaattttcgttcccccctttctcactttcccaa 15729677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 479
Target Start/End: Original strand, 17992083 - 17992165
Alignment:
Q  397 aatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    |||||| ||||||| ||| ||| |  ||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||    
T  17992083 aatgcacatttccaatctgctaaacactttccaaacaagttggaacccactacttctaaagctaatgggaggccagcagcata 17992165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 17662589 - 17662492
Alignment:
Q  393 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    |||||||| |||||||||| |  ||| | | || ||||| ||||  ||||| | |||||| ||||||||||||||||||||||||||||  |||||||    
T  17662589 atctaatgaagatttccatacatctaaacttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataagaaactgcac 17662492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 17713615 - 17713518
Alignment:
Q  393 atctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 490  Q
    |||||||| |||||||||| |  ||| | | || ||||| ||||  ||||| | |||||| ||||||||||||||||||||||||||||  |||||||    
T  17713615 atctaatgaagatttccatacatctaaacttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataagaaactgcac 17713518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 3281313 - 3281272
Alignment:
Q  51 tatatctttatggaaccacaacctgctatgtcttccaggctc 92  Q
    |||||||| ||||||||||||||||||| || ||||||||||    
T  3281313 tatatcttcatggaaccacaacctgctacgttttccaggctc 3281272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 593 - 797
Target Start/End: Complemental strand, 2822 - 2619
Alignment:
Q  593 atcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttag 692  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||      
T  2822 atcactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaacagttgttgcggctgtt-t 2724  T
Q  693 ggtgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcacttt 792  Q
    | |||||||||||  |          ||||||||||||| ||||||| ||  |||||||||||||||| |||||||||||  |||||| |||||||||||    
T  2723 gatgaaccgtcgtgagttttatttgataattaattagaaggcgcgttataatttttcattccccgcttaaccaaaatttcactcccccctttctcacttt 2624  T
Q  793 cccaa 797  Q
    |||||    
T  2623 cccaa 2619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 181 - 485
Target Start/End: Complemental strand, 16692397 - 16692093
Alignment:
Q  181 atctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatc 280  Q
    |||||||| || ||||||||| |||| || |  || || ||||| ||||| |||||||||| ||||  |||||||   |||| |||  |||| | |||||    
T  16692397 atctttataagggatttttcaaccaatactccaatatggtattttatgcatttaccataatgagcacaaagtataaactcaacttccgtcaaatcatatc 16692298  T
Q  281 ctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaat 380  Q
    |||||||||| ||||||||||| | ||||||| |||  ||||||| |||||||  |||||| |||||||||||||| |  || ||   ||||   |||||    
T  16692297 ctttgaagcaacaagcaatgtccaaaaaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaat 16692198  T
Q  381 ccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataa 480  Q
    || |  ||| ||||| |||| ||||||||||||| |||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||    
T  16692197 ccattcatatcgatcaaatgtagatttccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcataa 16692098  T
Q  481 gttac 485  Q
    |||||    
T  16692097 gttac 16692093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 13717639 - 13717601
Alignment:
Q  272 atttatatcctttgaagcagcaagcaatgtcgagaaaaa 310  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  13717639 atttatatcctttgaagcaacaagcaatgtcaagaaaaa 13717601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 235 - 479
Target Start/End: Original strand, 28126381 - 28126625
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||||||||||| | |||||  ||| ||||| |||| ||||||||||||||||| || |||||||| ||| | |||||||||| ||||||||    
T  28126381 ccataatgagcatgaagtatcttttcaacctctgtcaatctataccctttgaagcagcaagctatatcgagaaagacactttgctcatcttcctccaaag 28126480  T
Q  335 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 434  Q
    ||||| |||||| ||||| |||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||||||    
T  28126481 catcatagcttagtttaaatatctcttggatctttttatttggaatcttttcatatccatctaatgtacccttccattcttctatgctctttccaaataa 28126580  T
Q  435 gtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||| |||||||||| ||||| | | || |||||||| ||||||||    
T  28126581 gttggaacccactatttctataactaagggaaggcctgaagcata 28126625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 595 - 797
Target Start/End: Complemental strand, 21859813 - 21859612
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||  |     
T  21859813 cactacaagaaaaactgcattttgcgacacttcatctgcgaaccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttttga 21859714  T
Q  695 tgaaccgtcgtaggnnnnnnngtttaattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttcccccatttctcactttcc 794  Q
    ||||||||||   |          |||||||||| || || |||| ||  |||||||||||||||| |||||||||||  |||||| |||||||||||||    
T  21859713 tgaaccgtcgcgagttttatttgataattaattacaaggcacgttata-attttcattccccgcttaaccaaaatttcactcccccctttctcactttcc 21859615  T
Q  795 caa 797  Q
    |||    
T  21859614 caa 21859612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 186 - 490
Target Start/End: Original strand, 266997 - 267301
Alignment:
Q  186 tatgagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttg 285  Q
    |||||||||||||||| ||||||| |  |  |||| | | |||||||  ||||||| || ||||||||||| ||     |||| | ||| ||||||||||    
T  266997 tatgagagatttttcagccaacactcctagatgatgtgttatgcagtggccataatgagaatgaagtatatgtttggcatcttcccattcatatcctttg 267096  T
Q  286 aagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttc 385  Q
    ||||| ||||||||||| | ||| ||| ||||||| ||||  |||||| ||||| |||| |||||||||||||  || |||| |||| | |||||| |      
T  267097 aagcaacaagcaatgtctaaaaagacactctgctcctcttcttccaaaccatcatagctcactttaagtatcttttggatctctttattgggaatcttat 267196  T
Q  386 tataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttac 485  Q
     ||||| |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||| | ||||||| | || |||||||||||||||||||  ||    
T  267197 catacccatctaatgtacccttccattcttctatgctctttccaaacaagttagaacccacaatttctaaaactaacggaaggccagaagcataagcaac 267296  T
Q  486 tgcac 490  Q
    |||||    
T  267297 tgcac 267301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 269 - 454
Target Start/End: Original strand, 28132241 - 28132426
Alignment:
Q  269 tcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctt 368  Q
    ||||| |||| || |||||||| ||||| || || ||||| ||| | ||||| |||| ||||||||||||  | |||||||||| |||||| || |||||    
T  28132241 tcaatctataccccttgaagcaacaagctatatccagaaagacactttgctcctcttcctccaaagcatcgtaacttactttaaatatctcatggatctt 28132340  T
Q  369 tttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttcta 454  Q
    |||| | |||||| ||  ||| | |||||||| | | ||||||||| ||||  ||||||||||||||||||||||||||| |||||    
T  28132341 tttattaggaatcttttcatatccatctaatgtacacttccattcttctatgctctttccaaataagtttgaacccactatttcta 28132426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 594 - 664
Target Start/End: Original strand, 1390392 - 1390462
Alignment:
Q  594 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgca 664  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| ||||    
T  1390392 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaacttataactgcctcaaaatgca 1390462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 276 - 478
Target Start/End: Original strand, 5922216 - 5922418
Alignment:
Q  276 atatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatc 375  Q
    ||||||||||||||| |||||||| || ||||||||| | | ||| ||||  ||||||||||||||||| ||||| || | |   || |||||||||       
T  5922216 atatcctttgaagcaacaagcaatatcaagaaaaacacttttctcttcttcttccaaagcatcaaagctcacttttagcaacgtttgcatctttttatca 5922315  T
Q  376 ggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaag 475  Q
    |||||||||  ||| |||||||||| |||||| |||| | |||   | ||   ||||||||  ||||| | ||||||||||||||| |||||||||||||    
T  5922316 ggaatcctttcataacgatctaatgtagatttacattgttctactgttttatgaaataagtgagaacctattacttctaaagccaaaggaaggccagaag 5922415  T
Q  476 cat 478  Q
    |||    
T  5922416 cat 5922418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 595 - 690
Target Start/End: Original strand, 22916284 - 22916379
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 690  Q
    ||||||||||||| |  ||| ||||||||| ||||| ||||||| ||||||  ||||| ||||||||||||||||| ||| ||||||||| |||||    
T  22916284 cactacaagaaaatcatcaatttgcgacacctcatcagcgacccctaccttataactgtctcaaagtgcatttttgaaacggttgttgcgactgtt 22916379  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 26137176 - 26137120
Alignment:
Q  423 ctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||||||||| ||| | |||||||||||||||||||| || |||||||||||||||||    
T  26137176 ctttccaaacaagctggaacccactacttctaaagctaacggaaggccagaagcata 26137120  T

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Target: scaffold1870 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 189 - 479
Target Start/End: Complemental strand, 291 - 1
Alignment:
Q  189 gagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaag 288  Q
    ||||||||||||| ||||||| |  |  |||| ||| ||||| |  ||||||| |||| | |||||||||||||  || ||| ||  | |||||||||||    
T  291 gagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccacatcctttgaag 192  T
Q  289 cagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctat 388  Q
    || || |||||||| ||||||||| | ||||  |||| ||||||||||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||    
T  191 caacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcat 92  T
Q  389 accgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
T  91 atccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 1  T

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Target: chr7 (Bit Score: 78; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 595 - 704
Target Start/End: Original strand, 48629425 - 48629534
Alignment:
Q  595 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgttaggg 694  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||  |     
T  48629425 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttttga 48629524  T
Q  695 tgaaccgtcg 704  Q
    ||||||||||    
T  48629525 tgaaccgtcg 48629534  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 780
Target Start/End: Original strand, 48629549 - 48629609
Alignment:
Q  719 taattaattagaatgcgcgttgtatcttttcattccccgctttaccaaaatttcgttccccc 780  Q
    ||||||||||||| ||||||| ||  |||||||||||||||| ||| ||||||| |||||||    
T  48629549 taattaattagaacgcgcgttataa-ttttcattccccgcttaacccaaatttcattccccc 48629609  T

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Target: scaffold0277 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 235 - 479
Target Start/End: Original strand, 12381 - 12625
Alignment:
Q  235 ccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaag 334  Q
    ||||||| |||| ||||||||| |||||  || ||| ||  | ||||||||||||| || |||||||| ||||||||| | ||||  |||| ||||||||    
T  12381 ccataatgagcacgaagtatatattcaaactccttccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaag 12480  T
Q  335 catcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataa 434  Q
    ||||| ||||||||||||||||||| || ||||||||| | |||||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||    
T  12481 catcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaa 12580  T
Q  435 gtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    ||| |||||||||| ||||||| | || |||||||| ||||||||    
T  12581 gttggaacccactatttctaaaactaagggaaggcccgaagcata 12625  T

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Target: scaffold0277; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 278 - 479
Target Start/End: Original strand, 3461 - 3662
Alignment:
Q  278 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 377  Q
    ||||||||||||| || |||||||| ||||||||| | ||||  |||| ||||||||||||| ||||||||||||||||||  || ||||||||| | ||    
T  3461 atcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctggtggatctttttattggg 3560  T
Q  378 aatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagca 477  Q
    |||| ||  ||| | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||    
T  3561 aatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagca 3660  T
Q  478 ta 479  Q
    ||    
T  3661 ta 3662  T

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Target: scaffold0419 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 189 - 479
Target Start/End: Complemental strand, 9009 - 8719
Alignment:
Q  189 gagagatttttcatccaacacactgatttgatatttcatgcagttaccataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaag 288  Q
    ||||||||||||| ||||||| |  |  |||| ||| ||||| |  ||||||| |||| | |||||||||||||  || ||| ||  | |||||||||||    
T  9009 gagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccacatcctttgaag 8910  T
Q  289 cagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctat 388  Q
    || || |||||||| ||||||||| | ||||  |||| ||||||||||||| | ||||||||||||||||| || ||||||||| | |||||| ||  ||    
T  8909 caacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcataacttactttaagtatctcgtggatctttttattgggaatcttttcat 8810  T
Q  389 accgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcata 479  Q
    | | |||||||| |   ||||||||| ||||  |||||||||| ||||| |||||||||| ||||||| | || |||||||| ||||||||    
T  8809 atccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttctaaaactaagggaaggcccgaagcata 8719  T

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Target: scaffold0349 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 272 - 479
Target Start/End: Original strand, 2282 - 2489
Alignment:
Q  272 atttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatcttttt 371  Q
    ||||| ||| ||||||||| ||||||||||| ||||| ||| | ||||  |||| ||||||||||||| | ||||||||||||||||  || |||| |||    
T  2282 atttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctcttt 2381  T
Q  372 aatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaataagtttgaacccactacttctaaagccaatggaaggcca 471  Q
    | | ||||||||   ||||| |||||||| |   ||||||||  |||| ||||||||| ||||||| |||||||||| ||||| | | || |||||||||    
T  2382 attgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttccagataagttagaacccactatttctataactaacggaaggcca 2481  T
Q  472 gaagcata 479  Q
    ||||||||    
T  2482 gaagcata 2489  T

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Target: scaffold0003 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 234 - 481
Target Start/End: Complemental strand, 61046 - 60799
Alignment:
Q  234 accataattagcatgaagtatatcttcaagttctttcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaa 333  Q
    |||||||| |||||||||||| ||||  |  | || | ||||| | ||||||||||| ||||||||||| ||||| ||| | ||||| |||| |||||||    
T  61046 accataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaa 60947  T
Q  334 gcatcaaagcttactttaagtatctcctgtatctttttaatcggaatccttctataccgatctaatgcagatttccattctcctatattctttccaaata 433  Q
    | |||| |||| |||||||||||    || |||| |||| | |||||| ||  ||||| |||||||| |   || |||||| |||| ||||||||||| |    
T  60946 gaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttccaaaca 60847  T
Q  434 agtttgaacccactacttctaaagccaatggaaggccagaagcataag 481  Q
    |||| |||||||||| ||||| | | |  |||||||||||||||||||    
T  60846 agttagaacccactatttctataactaccggaaggccagaagcataag 60799  T

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Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 684
Target Start/End: Original strand, 111003 - 111089
Alignment:
Q  598 tacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcg 684  Q
    |||||||||| | |||  |||||||||| ||  |||||||||||||||  ||||||||||| |||||| || |||||||||||||||    
T  111003 tacaagaaaatcagcattttgcgacactgcaattgcgacccttaccttataactgcctcaatgtgcatattcgcaacagttgttgcg 111089  T

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Target: scaffold0131 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 684
Target Start/End: Original strand, 10296 - 10363
Alignment:
Q  617 tgcgacacttcatctgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcg 684  Q
    ||||||||||||| |||||||||||||||  ||||||||||| |||||  ||||||||||||| ||||    
T  10296 tgcgacacttcatttgcgacccttaccttataactgcctcaatgtgcaactttgcaacagttgctgcg 10363  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 238605 - 238682
Alignment:
Q  269 tcaatttatatcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagctta 346  Q
    |||||||||||||||||||||| || |||||||| ||||||||| | | ||| |||| ||  ||||||||| ||||||    
T  238605 tcaatttatatcctttgaagcaacatgcaatgtcaagaaaaacaattttctcttcttcctgtaaagcatcatagctta 238682  T

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Target: scaffold0164 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 684
Target Start/End: Complemental strand, 29984 - 29932
Alignment:
Q  631 tgcgacccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcg 684  Q
    |||||||||||||||  ||| ||||||| |||||| ||||||||||||||||||    
T  29984 tgcgacccttaccttttaaccgcctcaa-gtgcatatttgcaacagttgttgcg 29932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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