View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_22 (Length: 384)
Name: NF11885_low_22
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 26722115 - 26721758
Alignment:
| Q |
5 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattacacaacaaatagagtctt |
104 |
Q |
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| T |
26722115 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattacacaacaaatagagtctt |
26722016 |
T |
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| Q |
105 |
gaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcagaacctataaagtgtagatagaaac |
204 |
Q |
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| T |
26722015 |
aaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgtagaacctataaagtgtagatagaaac |
26721916 |
T |
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| Q |
205 |
aatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagtttgatgttcccaatcactttggg |
304 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
26721915 |
aatctcgttatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaagtgagtttgtttttcccaatcactttggg |
26721821 |
T |
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| Q |
305 |
aacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaac |
367 |
Q |
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| T |
26721820 |
aacatgctcttcaaaagagagtgataagcctctaacattccttgaaaggatagcagcgacaac |
26721758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 45116807 - 45117151
Alignment:
| Q |
5 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattacacaacaaatagagtctt |
104 |
Q |
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| T |
45116807 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattacacaacaaatagagtctt |
45116906 |
T |
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| Q |
105 |
gaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcagaacctataaagtgtagatagaaac |
204 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116907 |
aaaccattttctca-------------aatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctataaagtgtagatagaaac |
45116993 |
T |
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| Q |
205 |
aatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagtttgatgttcccaatcactttggg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
45116994 |
aatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaagtgaatttgatgttcccaatcactttggg |
45117088 |
T |
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| Q |
305 |
aacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaac |
367 |
Q |
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| T |
45117089 |
agcatgctcttaaaaagagagtgatgagcctcttacattccttgaaaggatggcagcgacaac |
45117151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 2987571 - 2987226
Alignment:
| Q |
5 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattacacaacaaatagagtctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
2987571 |
gagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatggaaattacacaacaaatagagtatt |
2987472 |
T |
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| Q |
105 |
gaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcagaacctataaagtgtagatagaaac |
204 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2987471 |
aaaccattttctcaaat-------------cataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctataaagtatagatagaaac |
2987385 |
T |
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| Q |
205 |
aatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnngtgagtttgatgttcccaatcactttggg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
2987384 |
aatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat----aaaaaaaaagtgaatttgatgttcccaatcactttggg |
2987289 |
T |
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| Q |
305 |
aacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaac |
367 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2987288 |
aacatgctcttaaaaagagagtgataagcctcttacattccttgaaaggatggcagcgacaac |
2987226 |
T |
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