View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11885_low_25 (Length: 359)
Name: NF11885_low_25
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 6360748 - 6361080
Alignment:
| Q |
11 |
caaagggacttggaaccaaaacactagaaaatgtgtgtttcttcatgtttgtggacgatgttaccctcaaaggtttagaacatcatggaatgatttcaat |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6360748 |
caaagggacttggaatcaaaacactagaaaatgtgtgtttcttcatgtttgtggacgatgttaccctcaaaggtttagaacatcatggaatgatttcaat |
6360847 |
T |
|
| Q |
111 |
aaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatgatttgtatcagagcccagcaatgaatgggattataccaaaatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6360848 |
aaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatgatttgtatcagagcccagcaatgaatgggattataccaaaatat |
6360947 |
T |
|
| Q |
211 |
ttagtccatagactatttccaaattcacaattcagtatttggatagatgcaaagttgcaactaatggttgatcctttgttgttgattcattcacttgtta |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6360948 |
ttaatccatagactatttccaaattcacaattcagtatttggatagatgcaaagttgcaactcatggttgatcctttgttgttgattcattcacttgtta |
6361047 |
T |
|
| Q |
311 |
taaatgagaatgtagatatggctatatcaaaac |
343 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
6361048 |
taaaggagaatgtagatatggctatatcaaaac |
6361080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 13033927 - 13033761
Alignment:
| Q |
68 |
atgttaccctcaaaggtttagaacatcatggaatgatttcaataaaatcccaagaatacaagataggtgtgtggaggcttgtgaaggttgcaaaagatga |
167 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| | |||| |||||||||| ||| | ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
13033927 |
atgttaccctcaaaggtcttgaacaccatggagtaattttaataaaatccaaagcaaacaagataggtgtgtagaggattgtgaaggttgcaaaagatga |
13033828 |
T |
|
| Q |
168 |
tttgtatcagagcccagcaatgaatgggattataccaaaatatttagtccatagactatttccaaat |
234 |
Q |
| |
|
|||||| |||| | || |||||| |||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
13033827 |
tttgtaacagaatcaagtgatgaatatgattatacaaaaatatttaatccatagactatttccaaat |
13033761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University