View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_27 (Length: 345)

Name: NF11885_low_27
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_27
NF11885_low_27
[»] chr5 (8 HSPs)
chr5 (1-325)||(29712646-29712970)
chr5 (83-313)||(29687640-29687870)
chr5 (92-312)||(29695742-29695962)
chr5 (219-288)||(42562726-42562795)
chr5 (222-284)||(1812043-1812105)
chr5 (4-44)||(29696064-29696104)
chr5 (5-37)||(42562515-42562547)
chr5 (222-283)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (185-283)||(24309796-24309894)
chr1 (222-297)||(24322067-24322142)
chr1 (159-284)||(24340032-24340157)
chr1 (225-283)||(24415456-24415514)
chr1 (222-270)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (161-284)||(15348480-15348603)
chr8 (221-307)||(12199902-12199988)
chr8 (221-307)||(12444330-12444416)
chr8 (221-307)||(12194896-12194982)
chr8 (221-307)||(12439324-12439410)
[»] chr4 (35 HSPs)
chr4 (186-301)||(48156789-48156904)
chr4 (173-284)||(48862859-48862973)
chr4 (161-280)||(7774166-7774285)
chr4 (159-284)||(48735647-48735775)
chr4 (161-278)||(7877344-7877461)
chr4 (189-277)||(7904657-7904745)
chr4 (188-298)||(45366582-45366695)
chr4 (189-300)||(48148047-48148161)
chr4 (186-301)||(45372419-45372534)
chr4 (194-277)||(49044599-49044682)
chr4 (188-280)||(7771026-7771118)
chr4 (218-278)||(49048993-49049053)
chr4 (186-280)||(7907947-7908041)
chr4 (221-283)||(33134223-33134285)
chr4 (186-284)||(48891027-48891125)
chr4 (187-284)||(7765239-7765336)
chr4 (222-282)||(48870162-48870222)
chr4 (222-282)||(48885848-48885908)
chr4 (221-280)||(7813102-7813161)
chr4 (221-280)||(7822591-7822650)
chr4 (186-277)||(49041500-49041591)
chr4 (188-280)||(7789711-7789803)
chr4 (190-277)||(7238086-7238173)
chr4 (221-280)||(7800259-7800318)
chr4 (221-276)||(33133663-33133718)
chr4 (173-284)||(48170935-48171049)
chr4 (189-274)||(48875474-48875559)
chr4 (181-277)||(37827351-37827447)
chr4 (219-282)||(48898342-48898405)
chr4 (225-280)||(48902572-48902627)
chr4 (5-42)||(7771261-7771298)
chr4 (187-280)||(7786065-7786158)
chr4 (5-42)||(7904890-7904927)
chr4 (5-37)||(7774010-7774042)
chr4 (5-37)||(7789951-7789983)
[»] scaffold0508 (1 HSPs)
scaffold0508 (185-284)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (182-284)||(21015394-21015496)
[»] chr3 (5 HSPs)
chr3 (221-284)||(11024934-11024997)
chr3 (221-280)||(11006359-11006418)
chr3 (221-284)||(11015922-11015985)
chr3 (221-280)||(47452304-47452363)
chr3 (1-43)||(47452087-47452129)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 29712646 - 29712970
Alignment:
Q  1 aactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcactatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712646 aactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcactatc 29712745  T
Q  101 atcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29712746 atcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcggtaagttgaaaatgt 29712845  T
Q  201 gaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712846 gaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaa 29712945  T
Q  301 tgattaactcaatagatagatattg 325  Q
    |||||||||||||||||||||||||    
T  29712946 tgattaactcaatagatagatattg 29712970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 83 - 313
Target Start/End: Complemental strand, 29687870 - 29687640
Alignment:
Q  83 tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttg 182  Q
    |||||| ||||||||||||||||  || |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  |||    
T  29687870 tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattg 29687771  T
Q  183 gcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 282  Q
    || |||||||||||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| ||||    
T  29687770 gcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggta 29687671  T
Q  283 acattaaaaggatttgaatgattaactcaat 313  Q
    || ||| ||||||||||||||| || |||||    
T  29687670 actttagaaggatttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 312
Target Start/End: Complemental strand, 29695962 - 29695742
Alignment:
Q  92 agcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagt 191  Q
    ||||||||||||||  || |||  ||| | ||| |||||||||||||  |||| |||||||||||| | |||||||   | ||||||   ||  ||||||    
T  29695962 agcactatcatcgttaagcgataattcaagatctatagatagagattgaagatatggagttatcaacataattctattcgtgtgtgtagcggtggtaagt 29695863  T
Q  192 tgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaa 291  Q
    ||||||||||||||||| || | || |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |    
T  29695862 tgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaata 29695763  T
Q  292 ggatttgaatgattaactcaa 312  Q
    |||||||||||||||||||||    
T  29695762 ggatttgaatgattaactcaa 29695742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  219 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 288  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29696104 - 29696064
Alignment:
Q  4 tcaaaagtataaaccctctacacgaacctttaatatcaagt 44  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  29696104 tcaaaagtataaagcctctacacgaacctttaaaatcaagt 29696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 42562515 - 42562547
Alignment:
Q  5 caaaagtataaaccctctacacgaacctttaat 37  Q
    |||||||||||||||||||||||||||||||||    
T  42562515 caaaagtataaaccctctacacgaacctttaat 42562547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 283  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  185 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 283  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 297  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 284
Target Start/End: Complemental strand, 24340157 - 24340032
Alignment:
Q  159 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 258  Q
    ||||||||| ||| |||||||   ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | ||||    
T  24340157 agaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttga 24340058  T
Q  259 aacgaataagagacttcaccggtaac 284  Q
    |||||||||||||||| |||||||||    
T  24340057 aacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  225 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 283  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 270  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 15348603 - 15348480
Alignment:
Q  161 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 260  Q
    ||||||| ||| |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  261 cgaataagagacttcaccggtaac 284  Q
    || |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 307  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 307  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 307  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 307  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  186 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 285  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  286 ttaaaaggatttgaat 301  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  173 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 269  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  270 gacttcaccggtaac 284  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  161 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 260  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || ||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  261 cgaataagagacttcaccgg 280  Q
     |||||||||||||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 48735647 - 48735775
Alignment:
Q  159 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcact 255  Q
    ||||||||| ||| ||| ||| |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |    
T  48735647 agaattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T
Q  256 tgaaacgaataagagacttcaccggtaac 284  Q
    |||||||||||||||||||||||||||||    
T  48735747 tgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  161 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 260  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  261 cgaataagagacttcacc 278  Q
    || |||||||||||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  189 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 277  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 298
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  188 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  285 attaaaaggatttg 298  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  189 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 285  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  286 ttaaaaggatttgaa 300  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  186 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 285  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  286 ttaaaaggatttgaat 301  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  194 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 277  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  188 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  218 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 278  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  186 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 283  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  186 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  187 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 282  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  222 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 282  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  186 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 277  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  188 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 277
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  190 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 277  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 276  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  173 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 269  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  270 gacttcaccggtaac 284  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  189 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 274  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  181 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 277  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  219 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 282  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  225 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7771298 - 7771261
Alignment:
Q  5 caaaagtataaaccctctacacgaacctttaatatcaa 42  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771298 caaaagtataaaccctctacacgaacctctaatttcaa 7771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  187 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7904927 - 7904890
Alignment:
Q  5 caaaagtataaaccctctacacgaacctttaatatcaa 42  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7904927 caaaagtataaaccctctacacgaacctctaatttcaa 7904890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 7774010 - 7774042
Alignment:
Q  5 caaaagtataaaccctctacacgaacctttaat 37  Q
    |||||||||||||||||||||||||||| ||||    
T  7774010 caaaagtataaaccctctacacgaacctctaat 7774042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 7789983 - 7789951
Alignment:
Q  5 caaaagtataaaccctctacacgaacctttaat 37  Q
    |||||||||||||||||||||||||||| ||||    
T  7789983 caaaagtataaaccctctacacgaacctctaat 7789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  185 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  182 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 281  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  282 aac 284  Q
    |||    
T  21015396 aac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 284  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  221 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 280  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47452087 - 47452129
Alignment:
Q  1 aactcaaaagtataaaccctctacacgaacctttaatatcaag 43  Q
    |||| |||||||||||||||||||| ||||||||||| |||||    
T  47452087 aacttaaaagtataaaccctctacatgaacctttaatttcaag 47452129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University