View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_29 (Length: 335)

Name: NF11885_low_29
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_29
NF11885_low_29
[»] chr4 (6 HSPs)
chr4 (135-321)||(1322784-1322969)
chr4 (205-284)||(300131-300210)
chr4 (205-284)||(38102270-38102349)
chr4 (27-95)||(11842354-11842421)
chr4 (28-80)||(25295124-25295176)
chr4 (26-74)||(45911324-45911372)
[»] chr6 (2 HSPs)
chr6 (28-95)||(16509327-16509394)
chr6 (28-85)||(29431857-29431914)
[»] chr8 (3 HSPs)
chr8 (27-85)||(22591548-22591606)
chr8 (27-95)||(38198179-38198247)
chr8 (29-94)||(36166221-36166286)
[»] chr1 (1 HSPs)
chr1 (28-91)||(25454802-25454861)
[»] chr2 (2 HSPs)
chr2 (32-91)||(15915780-15915841)
chr2 (14-94)||(18811361-18811441)
[»] chr7 (1 HSPs)
chr7 (28-75)||(30592299-30592347)
[»] chr5 (1 HSPs)
chr5 (26-94)||(28975227-28975295)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 1322784 - 1322969
Alignment:
Q  135 attaactaaccttatcttgaccaagagatgatataacttggtgtaacttctttttaaattcaggtatgttaaagaaggaagcacagtgagtgtaatgggg 234  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1322784 attaactaaccttatcttgaccaagagatgatataacttg-tgtaacttctttttaaattcaggtatgttaaagaaggaagcacggtgagtgtaatgggg 1322882  T
Q  235 gttgttcacaggaatgagaatgtgcttatgattgttcctccaccagagccaattacaacaggttgccactggctcaaatgtattttt 321  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1322883 gttgttcacaggaatgagaacgtgcttatgattgttcctccaccagagccaattacaacaggttgccactggctcaaatgtattttt 1322969  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 300210 - 300131
Alignment:
Q  205 aaagaaggaagcacagtgagtgtaatgggggttgttcacaggaatgagaatgtgcttatgattgttcctccaccagagcc 284  Q
    |||||||| ||||| || ||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||| || |||||    
T  300210 aaagaaggtagcacggttagtgtaatgggagttgttcatagaaatgacaatgtacttatgattgtgcctccgcctgagcc 300131  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 38102270 - 38102349
Alignment:
Q  205 aaagaaggaagcacagtgagtgtaatgggggttgttcacaggaatgagaatgtgcttatgattgttcctccaccagagcc 284  Q
    |||||||| ||||| || || |||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| |||||    
T  38102270 aaagaaggtagcacggttagcgtaatgggagttgttcatagaaatgacaatgtacttatgattgtgcctccacctgagcc 38102349  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 11842354 - 11842421
Alignment:
Q  27 acttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaag 95  Q
    |||||||||||||||| |||||  |||||||| |||||||||||  |||||||| |||| |||||||||    
T  11842354 acttacttttctttttcaaattacagacactataaaatattttt-taaatgaattaagtctgattgaag 11842421  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 25295124 - 25295176
Alignment:
Q  28 cttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaat 80  Q
    ||||||||||||||| ||||| | ||||||| ||||||| |||||||||||||    
T  25295124 cttacttttctttttaaaattcaggacactataaaatatctttaaaaatgaat 25295176  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 45911324 - 45911372
Alignment:
Q  26 aacttacttttcttttttaaattgaagacactaaaaaatatttttaaaa 74  Q
    |||||||||||||||||||||||   || |||| |||||||||||||||    
T  45911324 aacttacttttcttttttaaattacggatactataaaatatttttaaaa 45911372  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 16509327 - 16509394
Alignment:
Q  28 cttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaag 95  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||| |||||||| |||||||||    
T  16509327 cttacttttcttttttgaattaaagacactataaaatgtttttaaaaataaatcaagtgtgattgaag 16509394  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 29431914 - 29431857
Alignment:
Q  28 cttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagt 85  Q
    ||||||| ||||||||||||| |||||||   |||||||||| |||||||||| ||||    
T  29431914 cttacttctcttttttaaattaaagacaccgtaaaatattttcaaaaatgaattaagt 29431857  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 22591606 - 22591548
Alignment:
Q  27 acttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagt 85  Q
    ||||||||||||| |||||||| | ||||||| |||||||||||||||| |||| ||||    
T  22591606 acttacttttcttgtttaaattaaggacactataaaatatttttaaaaaagaatgaagt 22591548  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 38198247 - 38198179
Alignment:
Q  27 acttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaag 95  Q
    ||||||||||| ||||||||||  |||||||| ||| | ||||| ||||||||| |||| |||||||||    
T  38198247 acttacttttcatttttaaattacagacactataaagtgttttttaaaatgaattaagtgtgattgaag 38198179  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 36166286 - 36166221
Alignment:
Q  29 ttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaa 94  Q
    |||||||| |||| ||||||   |||| || ||||||||||||||||| |||||||| ||||||||    
T  36166286 ttacttttattttataaattacggacattataaaatatttttaaaaatcaatcaagtgtgattgaa 36166221  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 25454802 - 25454861
Alignment:
Q  28 cttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgatt 91  Q
    |||||||||||||||||||||||||||||    |||| ||||||||||||||| |||| |||||    
T  25454802 cttacttttcttttttaaattgaagacac----aaatgtttttaaaaatgaattaagtctgatt 25454861  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 15915780 - 15915841
Alignment:
Q  32 cttttcttttttaaattgaagaca--ctaaaaaatatttttaaaaatgaatcaagtatgatt 91  Q
    ||||||||||||||||| ||||||   ||||| |||||||| ||||||||| ||||||||||    
T  15915780 cttttcttttttaaattaaagacaatataaaatatattttttaaaatgaattaagtatgatt 15915841  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 18811361 - 18811441
Alignment:
Q  14 gatgaagggaataacttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaa 94  Q
    |||| ||||||| ||||||||||||||||||||||  ||  |||| ||| | ||||| ||||| ||| |||| ||||||||    
T  18811361 gatggagggaatgacttacttttcttttttaaattacagtaactataaagtgttttttaaaataaattaagtgtgattgaa 18811441  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30592299 - 30592347
Alignment:
Q  28 cttacttttcttttttaaattgaagacactaaaaaat-atttttaaaaa 75  Q
    |||||||||||||||||||||  |||||||| ||||| |||||||||||    
T  30592299 cttacttttcttttttaaattacagacactataaaatgatttttaaaaa 30592347  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 28975227 - 28975295
Alignment:
Q  26 aacttacttttcttttttaaattgaagacactaaaaaatatttttaaaaatgaatcaagtatgattgaa 94  Q
    |||||| ||||||||| |||||| |  || ||| |||||| |||||||| ||||| |||||||||||||    
T  28975227 aacttatttttcttttctaaattaattacgctataaaataattttaaaattgaatgaagtatgattgaa 28975295  T

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