View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_3 (Length: 753)
Name: NF11885_low_3
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 19 - 743
Target Start/End: Original strand, 36892675 - 36893400
Alignment:
| Q |
19 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataaca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36892675 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagtaccaagtgccattcataaca |
36892774 |
T |
|
| Q |
119 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892775 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
36892874 |
T |
|
| Q |
219 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36892875 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagccgaggcattaggtggtgataaaccttggcagattgctggt |
36892974 |
T |
|
| Q |
319 |
tctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaat-gtataatctttatctcttccaagtgaaaatgtttgtacaagttgatcca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892975 |
tctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaattgtataatctttatctcttccaagtgaaaatgtttgtacaagttgatcca |
36893074 |
T |
|
| Q |
418 |
tgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893075 |
tgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaag |
36893174 |
T |
|
| Q |
518 |
agaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagct |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893175 |
agaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagct |
36893274 |
T |
|
| Q |
618 |
ggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccattt |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893275 |
ggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccattt |
36893374 |
T |
|
| Q |
718 |
cttcacttattggtctctgctcctcc |
743 |
Q |
| |
|
|||||||||| |||||||||| |||| |
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|
| T |
36893375 |
cttcacttatcggtctctgcttctcc |
36893400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 33 - 364
Target Start/End: Original strand, 36881599 - 36881936
Alignment:
| Q |
33 |
gacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaa |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| | |||||| ||| |
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|
| T |
36881599 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
36881698 |
T |
|
| Q |
133 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgag------aatgattaagcattcaaaaccagaactttggaata |
226 |
Q |
| |
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||||||||||||| ||||||||| || | || ||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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| T |
36881699 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaagcactcaaaaccagaactttggaata |
36881798 |
T |
|
| Q |
227 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
326 |
Q |
| |
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| || ||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||| |
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| T |
36881799 |
acttaattcttgcaatggataaggaggagaatacaatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgcctt |
36881898 |
T |
|
| Q |
327 |
gcaaatgatgtgggatataaaatggtttcaggtacata |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
36881899 |
acaaatgatgtgggatataaaatggtttcaggtacata |
36881936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 444 - 738
Target Start/End: Original strand, 36883098 - 36883392
Alignment:
| Q |
444 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
543 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || |
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| T |
36883098 |
ttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaa |
36883197 |
T |
|
| Q |
544 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgc |
643 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
36883198 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagcca |
36883297 |
T |
|
| Q |
644 |
tgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
738 |
Q |
| |
|
||||||||||||||||| ||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| |
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|
| T |
36883298 |
agtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 446 - 709
Target Start/End: Original strand, 36902908 - 36903168
Alignment:
| Q |
446 |
ggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggt |
545 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||| | || ||||| || ||||||||| | | | || |||||| || |||| ||||| |
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| T |
36902908 |
ggagcagtatatcaaaagccttgtgccagaacacttacatttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggt |
36903007 |
T |
|
| Q |
546 |
cttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctg |
645 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| || | |
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|
| T |
36903008 |
cttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcag |
36903107 |
T |
|
| Q |
646 |
tacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
709 |
Q |
| |
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|||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
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|
| T |
36903108 |
tacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 36901989 - 36902141
Alignment:
| Q |
215 |
aactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcag---at |
311 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||| | |||||||| ||||||||||||||||||||||| || || |||||||||| | ||| || |
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| T |
36901989 |
aactttggaatagcttggttcttgcaaaggatgataagcagaatacaatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatat |
36902088 |
T |
|
| Q |
312 |
tgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacata |
364 |
Q |
| |
|
|||| | ||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36902089 |
tgctaggtctgcattacaaatgatgtgggatatgaaatggtttcaggtacata |
36902141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 36901716 - 36901846
Alignment:
| Q |
35 |
caccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaaga |
134 |
Q |
| |
|
||||| ||||||||||||| | |||||| ||| ||||||||| || ||||||||||| || ||||| |||| | | || |||| |||||| ||| | |
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| T |
36901716 |
caccaattttggttgcagctagaaatggcatatatgaaatggtgaaagaaattctaatcgaagcaccaactgccctccgtagtactaactcaagcaaaca |
36901815 |
T |
|
| Q |
135 |
aaatgtattgcttgttgcagtcaaatacagg |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
36901816 |
aaatgtattgcttgttgcagtagaatacagg |
36901846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
314 |
ctggttctgccttgcaaatgatgtgggatataaaatggtttcaggta |
360 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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