View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_30 (Length: 330)
Name: NF11885_low_30
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_30 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 38634675 - 38634374
Alignment:
| Q |
12 |
agaaacaaagataagagaaacgggatcatgcactatcagtgtgactatcatctaataacatactaattgtgtcattttgttatattaatttatttcttaa |
111 |
Q |
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| T |
38634675 |
agaaacaaagataagagaaacgggatcatgcactatcagtgtgactatcatctaataacatactaattgtgtcattttgttgtattaatttatttcttaa |
38634576 |
T |
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| Q |
112 |
caaacatctatatgatgaaatgtgttaagatgattgtgtaaaacttttttgcgatgtaaatttcagagcaatccgatcaagtaacctataattaagtccc |
211 |
Q |
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| T |
38634575 |
caaacatctatatgatgaaatgtgttaagatgattgtgtaaaacttttttgcgatgtaaatttcagagcaatccgatcaagtaacctataattaagtccc |
38634476 |
T |
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| Q |
212 |
tataaataacatatagcgaactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggacttt |
311 |
Q |
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| T |
38634475 |
tataaataacatatagcgaactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggacttt |
38634376 |
T |
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| Q |
312 |
at |
313 |
Q |
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|| |
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| T |
38634375 |
at |
38634374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 38638711 - 38638628
Alignment:
| Q |
230 |
aactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggactttat |
313 |
Q |
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| T |
38638711 |
aactaaactaactaccaacctctgaacgtgacatcttatcaagggctgctatatctttttctttagccaactgatgcactttat |
38638628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 38692194 - 38692134
Alignment:
| Q |
229 |
gaactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatcttttt |
289 |
Q |
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| T |
38692194 |
gaactaaaccaattaccagcctctgaacttgacatctcatcaaggactcttacatcttttt |
38692134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 40766881 - 40766978
Alignment:
| Q |
214 |
taaataacatatagcgaactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggacttt |
311 |
Q |
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| T |
40766881 |
taaataacatatagggacttaaaccaacaacagacctctgaacaagaaatctcatcaagggatgctacatctttttcttcaaccagctgctggacttt |
40766978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 13654 - 13603
Alignment:
| Q |
242 |
taccaacctctgaatttgacatctcatctagggttgatacatctttttcttc |
293 |
Q |
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| T |
13654 |
taccaacctctgaacttgacatctcatcaaggagtgttacatctttttcttc |
13603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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