View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_31 (Length: 322)

Name: NF11885_low_31
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_31
NF11885_low_31
[»] chr2 (1 HSPs)
chr2 (16-305)||(36333198-36333485)
[»] chr6 (3 HSPs)
chr6 (158-189)||(2629670-2629701)
chr6 (158-189)||(22979591-22979622)
chr6 (158-189)||(23808782-23808813)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 36333198 - 36333485
Alignment:
Q  16 agcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgatnnnnnnnnnnnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  36333198 agcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgatagagagagagagag 36333297  T
Q  116 nnnnnaggatactagtagtattatgttgtactaacnnnnnnncaaagtgagaatcttttgagtacttatcaaagnnnnnnnncacattaaaaagtgactc 215  Q
         ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||        | ||||||||||||||||    
T  36333298 aga--aggatactagtagtattatgttgtactaacaaaaaaacaaagtgagaatcttttgagtacttatcaaagttttttttcgcattaaaaagtgactc 36333395  T
Q  216 attctcacacactcttcacttgatatagtgaaaacttgtgtttctctaacacaagtctaaagaaacagttcacaaaaaatggctgaaaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36333396 attctcacacactcttcacttgatatagtgaaaacttgtgtttctctaacacaagtctaaagaaacagttcacaaaaaatggctgaaaat 36333485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 2629701 - 2629670
Alignment:
Q  158 caaagtgagaatcttttgagtacttatcaaag 189  Q
    ||||||||||||||||||||||||||||||||    
T  2629701 caaagtgagaatcttttgagtacttatcaaag 2629670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 22979622 - 22979591
Alignment:
Q  158 caaagtgagaatcttttgagtacttatcaaag 189  Q
    ||||||||||||||||||||||||||||||||    
T  22979622 caaagtgagaatcttttgagtacttatcaaag 22979591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 189
Target Start/End: Original strand, 23808782 - 23808813
Alignment:
Q  158 caaagtgagaatcttttgagtacttatcaaag 189  Q
    ||||||||||||||||||||||||||||||||    
T  23808782 caaagtgagaatcttttgagtacttatcaaag 23808813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University