View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_34 (Length: 308)
Name: NF11885_low_34
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 48965112 - 48965381
Alignment:
| Q |
22 |
gtcgacacgtccaccgttccaacaaaagttgagcacaattcaccaccatctacacaggcacaaagtgttagggatcaatcatcaggatttgttacaaaga |
121 |
Q |
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| T |
48965112 |
gtcgacacgtccaccgttccaacaaaagttgagcacaattcaccaccatctacacaggcacaaagtgttagggatcaatcatcaggatttgttacaaaga |
48965211 |
T |
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| Q |
122 |
cattgcaattcctgttgcctctactcatattggcctttgcgtttgctatgcagcactacggaaaaaagaaacaagtcagcgactcataaaacctgaactt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965212 |
cattgcaattcctgttgcctctactcatattggcctttgcgtatgctatgcagcactacggaaaaaagaaacaagtcagcgactcataaaacctgaactt |
48965311 |
T |
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| Q |
222 |
ggagcaacaattattttgtgcatgaatcaaatgcattactctgcccaatacaatgcagggctcttgatgt |
291 |
Q |
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| T |
48965312 |
gaagcaacaattattttgtgcatgaatcaaattcattactctgcccaatacaatgcagggctcttgatgt |
48965381 |
T |
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