View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_36 (Length: 284)

Name: NF11885_low_36
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_36
NF11885_low_36
[»] chr1 (17 HSPs)
chr1 (10-90)||(13120774-13120854)
chr1 (10-85)||(17674267-17674342)
chr1 (10-90)||(44836633-44836713)
chr1 (11-90)||(22386744-22386823)
chr1 (155-242)||(24557023-24557110)
chr1 (10-80)||(42740186-42740256)
chr1 (155-242)||(17674110-17674197)
chr1 (10-85)||(24556882-24556957)
chr1 (10-85)||(26486286-26486361)
chr1 (155-249)||(37873505-37873599)
chr1 (155-249)||(42740326-42740420)
chr1 (11-90)||(37873665-37873749)
chr1 (10-90)||(27703437-27703517)
chr1 (159-237)||(22386597-22386675)
chr1 (155-248)||(26486125-26486218)
chr1 (10-85)||(84-160)
chr1 (10-85)||(48722281-48722357)
[»] chr5 (12 HSPs)
chr5 (10-85)||(17325921-17325996)
chr5 (10-90)||(10033623-10033702)
chr5 (20-85)||(18873546-18873611)
chr5 (164-241)||(17326075-17326152)
chr5 (155-243)||(16515726-16515814)
chr5 (10-90)||(7390309-7390388)
chr5 (9-61)||(138219-138270)
chr5 (155-243)||(7390156-7390244)
chr5 (155-245)||(8379197-8379286)
chr5 (201-242)||(931636-931677)
chr5 (156-248)||(3349479-3349571)
chr5 (25-85)||(16515596-16515656)
[»] chr6 (7 HSPs)
chr6 (10-90)||(6294330-6294410)
chr6 (12-90)||(3748476-3748554)
chr6 (10-82)||(30915277-30915349)
chr6 (10-90)||(21946183-21946261)
chr6 (155-236)||(3748329-3748411)
chr6 (10-85)||(29149480-29149556)
chr6 (201-237)||(22504011-22504047)
[»] chr2 (13 HSPs)
chr2 (155-254)||(13997534-13997633)
chr2 (10-90)||(29480545-29480625)
chr2 (12-84)||(38599479-38599551)
chr2 (12-84)||(38599593-38599665)
chr2 (155-243)||(39081617-39081704)
chr2 (13-62)||(39081476-39081525)
chr2 (10-90)||(1418985-1419065)
chr2 (10-90)||(13997390-13997469)
chr2 (11-82)||(36059821-36059892)
chr2 (197-232)||(1419172-1419207)
chr2 (165-248)||(29480386-29480469)
chr2 (10-85)||(26151658-26151734)
chr2 (155-243)||(36059660-36059748)
[»] chr7 (14 HSPs)
chr7 (12-85)||(36438264-36438337)
chr7 (10-90)||(7366763-7366843)
chr7 (10-90)||(40737908-40737988)
chr7 (10-90)||(26633439-26633519)
chr7 (155-237)||(7370013-7370094)
chr7 (10-61)||(18895334-18895385)
chr7 (10-85)||(32956851-32956927)
chr7 (180-236)||(40737760-40737816)
chr7 (10-85)||(40841157-40841233)
chr7 (155-233)||(36438117-36438194)
chr7 (201-237)||(4100228-4100264)
chr7 (10-85)||(12251199-12251275)
chr7 (10-85)||(33419028-33419104)
chr7 (156-243)||(40001466-40001553)
[»] chr8 (11 HSPs)
chr8 (10-90)||(3628655-3628735)
chr8 (10-84)||(36515069-36515143)
chr8 (9-85)||(42076185-42076260)
chr8 (180-249)||(35875147-35875216)
chr8 (10-85)||(29372433-29372508)
chr8 (155-234)||(42076330-42076408)
chr8 (11-90)||(32098085-32098165)
chr8 (200-243)||(33453021-33453064)
chr8 (188-234)||(18112378-18112424)
chr8 (174-248)||(36514905-36514978)
chr8 (10-85)||(44664957-44665033)
[»] chr3 (15 HSPs)
chr3 (12-90)||(42009170-42009248)
chr3 (11-90)||(46904819-46904898)
chr3 (10-84)||(50677228-50677302)
chr3 (12-90)||(7767144-7767222)
chr3 (155-243)||(46904963-46905051)
chr3 (10-82)||(51147014-51147085)
chr3 (10-64)||(36538120-36538174)
chr3 (183-248)||(27303436-27303501)
chr3 (155-243)||(7767287-7767375)
chr3 (10-90)||(27303263-27303341)
chr3 (155-242)||(42009039-42009126)
chr3 (201-248)||(51147205-51147252)
chr3 (10-85)||(52655034-52655110)
chr3 (10-55)||(15987276-15987321)
chr3 (200-248)||(48626779-48626827)
[»] chr4 (10 HSPs)
chr4 (10-90)||(35653888-35653968)
chr4 (10-84)||(10575437-10575511)
chr4 (12-85)||(22423764-22423837)
chr4 (180-249)||(24449347-24449416)
chr4 (155-243)||(35653735-35653823)
chr4 (10-85)||(5545405-5545481)
chr4 (10-90)||(21791456-21791535)
chr4 (199-237)||(22423938-22423976)
chr4 (160-248)||(23256825-23256911)
chr4 (10-85)||(41038327-41038403)
[»] scaffold0564 (1 HSPs)
scaffold0564 (10-85)||(1138-1214)
[»] scaffold0035 (1 HSPs)
scaffold0035 (10-85)||(22716-22792)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 13120854 - 13120774
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  13120854 cgcataaaccattcattttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 13120774  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 17674342 - 17674267
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||    
T  17674342 cgcataaaccatttgttttcccctttcctacgacgtaagagtgacattccaaatgacaccgttaggtaaatttcac 17674267  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44836713 - 44836633
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |  |||| |||||||||||||| ||||    
T  44836713 cgcataaaccattcgtttttccctttcccacgacgtaggagtgacattccaaatgacaccgctaggtaaatttcacatctc 44836633  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 22386823 - 22386744
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||  |||||||||| ||||    
T  22386823 gcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaaataaatttcacatctc 22386744  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 24557023 - 24557110
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||| | || ||||||||| |||||    
T  24557023 gaagcttagctacacaaaaagaattgcgttttgattttactaggacctattttaaaaatagaatcgagcatcatatttcatataaacg 24557110  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 42740186 - 42740256
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaat 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||    
T  42740186 cgcataaacaattcgttttcccctttcctacgacgtaggagtgacattccaaatgaaactgttaggtaaat 42740256  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 17674197 - 17674110
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||| ||||||||||| ||||||||| ||||||||||| || || |||||||||||||||||  |||||||| |||||||||| ||||    
T  17674197 gaagtttaactacacaaaaagaattgtgttttgattttactggagcctattttaaaaatagagtcgaacctcttatttcataggaacg 17674110  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 24556882 - 24556957
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |  |||||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  24556882 cgcataaaccattcgtttttctttttcctatcacgtaggagtgacattccaaacgacaccgttaggtaaatttcac 24556957  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 26486361 - 26486286
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |  |||||| ||||||||||||    
T  26486361 cgcataaactattcgttttcctctttcctacgacgtagaagtgacattccaaatgacaccgtttggtaaatttcac 26486286  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 37873599 - 37873505
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    |||||||||||||||| ||| |||| | |||| ||||| || |  |||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  37873599 gaagcttaactacacacaaaaaattacatttttattttactggggcctattttaaaaatagaatcgagcctcctatttcatagaaacggccctgc 37873505  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 42740326 - 42740420
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    |||| ||||| ||||| ||| |||| |||||| ||||| || |  |||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  42740326 gaagtttaaccacacaaaaaaaattacgtttttattttactggggcctattttaaaaatagaaccgagcctcctatttcataggaacggccctgc 42740420  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 37873749 - 37873665
Alignment:
Q  11 gcataaaccattcgttttcccctttcct-----acgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||| |||||||  || |||| ||||||||||| ||||    
T  37873749 gcataaaccattcgttttcccctttcctacgatacgacgtaggagtgacatgccaaacgacactgttacgtaaatttcacctctc 37873665  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 27703517 - 27703437
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| |||||| | || ||| | |||||||| ||||||||  || |||||||||||||||| ||||    
T  27703517 cgcataaaccattcgtttttcccttttccaccacggaagagtgacaatccaaacgacactgttaggtaaatttcacctctc 27703437  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 22386675 - 22386597
Alignment:
Q  159 cttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||| | ||| |||||| |||||||||| ||    ||||||||||||||| |||||| |||||||||||||||    
T  22386675 cttaactacaaaaaaaaaattgcattttgattttactgcggcctattttaaaaataaaaccgagcctcctatttcatag 22386597  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 26486218 - 26486125
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||||||| ||||||| ||| || ||| |||| ||||| || |  |||||||| ||||||||||||| |||||||||| |||| ||||| ||||    
T  26486218 gaagcttagctacacacaaaaaaatgcatttttattttactcgggcctattttgaaaatagaaccgagcctcctattttataggaacggccctg 26486125  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 84 - 160
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  84 cgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 160  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 48722357 - 48722281
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  48722357 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 48722281  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 17325921 - 17325996
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  17325921 cgcataaaccattcgctttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcac 17325996  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 10033623 - 10033702
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  10033623 cgcataaaccattcgttttccc-tttcctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcacctctc 10033702  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18873546 - 18873611
Alignment:
Q  20 attcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18873546 attcgttttcccctttcctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcac 18873611  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 17326075 - 17326152
Alignment:
Q  164 ctacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaac 241  Q
    ||||||| ||||||||||||||||||||| || || |||||||||||||||||||||| |||| ||||||||||||||    
T  17326075 ctacacaaaaagaattgcgttttgattttactggagcctattttaaaaatagaaccgagcctcatatttcatagaaac 17326152  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 16515726 - 16515814
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| || |||||||| ||||| || |  |||||||||||||||||||||||||||||||||||||| |||||    
T  16515726 gaagcttagctacacacaaaaaaatgcgtttttattttactcgggcctattttaaaaatagaaccgaacctcctatttcataggaacgg 16515814  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7390388 - 7390309
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||  |||||||| |||||||||| ||||    
T  7390388 cgcataaaccattcgttttcccctttcctgcgacatagaagtgacatt-caaacgacaccgttagataaatttcacctctc 7390309  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 138219 - 138270
Alignment:
Q  9 ccgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaa 61  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  138219 ccgcataaaccattcgttttccccttt-ctacgaagtagtagtgacattccaa 138270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 7390244 - 7390156
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| |||| |||||| |||||  |||   ||||||||||||||||||||| ||| ||||||||||| |||||    
T  7390244 gaagcttagctacacacaaaaaattacgtttttattttattagggactattttaaaaatagaaccgagccttctatttcataggaacgg 7390156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 8379286 - 8379197
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtc 245  Q
    ||||| |||||||||| ||| || | | |||| ||||| ||||| ||||||||||||| ||| ||||| |||||||||||||  |||||||    
T  8379286 gaagcataactacacaaaaaaaaatccatttttattttactaga-cctattttaaaaagagagccgaatctcctatttcataagaacggtc 8379197  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 931636 - 931677
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||||||| ||| |||||||||||||||||||| ||||    
T  931636 ctattttaaaaagagagccgaacctcctatttcataggaacg 931677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 3349571 - 3349479
Alignment:
Q  156 aagcttaactacacagaaagaattgcgttttgattttcctaga-acctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||| ||||||| ||| ||||||||||| |||||  | || |||||||||||| | ||| |||| |||||||||||||||  |||||||||    
T  3349571 aagcttagctacacaaaaa-aattgcgtttttattttattggagacctattttaaatagagagccgagcctcctatttcatagggacggtcctg 3349479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 16515596 - 16515656
Alignment:
Q  25 ttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||| |||||| |||||| ||||||||||||||||||| |  ||| |||| ||||||||||    
T  16515596 tttttcccttttctacgatgtaggagtgacattccaaatgacaccattagctaaatttcac 16515656  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 6294330 - 6294410
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  6294330 cgcataaactattcgttttcccctttcccacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 6294410  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 3748554 - 3748476
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||||| |  ||||||||||||||||||| ||||    
T  3748554 cataaactattcgttttcccctttcatgcgacgtaggagtgacattccaaatgacaccgttaggtaaatttcacatctc 3748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 30915349 - 30915277
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||  ||||||| ||||||||    
T  30915349 cgcataaaccattcattatcccctttcttacgacgtagaagtgacatttcaaacgacaccgttatgtaaattt 30915277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 21946183 - 21946261
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||||||  ||||||||||||||| ||| ||||    
T  21946183 cgcataaacaattcgttttcctctttcctac-acgtaagagtgacatt-caaacgacaccgttaggtaaattccacctctc 21946261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 3748411 - 3748329
Alignment:
Q  155 gaagcttaactacacagaaagaat-tgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcata 236  Q
    |||||||| ||||||| ||| ||  ||| |||| ||||| || | ||||||||||||||||||||||| ||||||||||||||    
T  3748411 gaagcttagctacacacaaaaaaaatgcatttttattttactcggacctattttaaaaatagaaccgagcctcctatttcata 3748329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 29149480 - 29149556
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | |||||||| |||||||| |||||||||||    
T  29149480 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgataccgttacgtaaatttcac 29149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 22504011 - 22504047
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||| |||||||| |||||||||||||||    
T  22504011 ctattttaaaaagagaaccgagcctcctatttcatag 22504047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 13997534 - 13997633
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgctgatg 254  Q
    |||||||| ||||||| ||||||||||||||||||||| ||    |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  13997534 gaagcttagctacacaaaaagaattgcgttttgattttactgtggcctattttaaaaatagaaccgagcctcctatttcataggaacggtcctgcagatg 13997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 29480625 - 29480545
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||| || |||||||||| |||||| ||||||||||||||||||||  ||||||||||||| ||||| ||||    
T  29480625 cgcataaaccatttgtcttcccctttcttacgacataggagtgacattccaaacgacaccgttaggtaaagttcacctctc 29480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38599479 - 38599551
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  ||||||||||||||||||    
T  38599479 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttca 38599551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38599593 - 38599665
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  ||||||||||||||||||    
T  38599593 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttca 38599665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 39081617 - 39081704
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||||||||||| ||| ||||  ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||| |||||    
T  39081617 gaagcttaactacacaaaaa-aattatgtttttattttactgggacctattttaaaaatagaaccgaacctcctatttcataggaacgg 39081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 39081476 - 39081525
Alignment:
Q  13 ataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaa 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39081476 ataaaccattagttttcccctttcctacgacgtaggagtgacattccaaa 39081525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 1418985 - 1419065
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||| ||||  ||||||||| |||||| ||||||||||||||| |  ||||||||||||||||||||||||    
T  1418985 cgcataaactattcattttttcctttcctatgacgtatgagtgacattccaaatgacaccgttaggtaaatttcacttctc 1419065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 13997390 - 13997469
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||   ||  ||||||||||||||| ||||    
T  13997390 cgcataaaccattcgttttccc-tttcctacgacgtatgagtgacattccaaacaacacatttaggtaaatttcacatctc 13997469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36059892 - 36059821
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||   |||||| ||||||||    
T  36059892 gcataaaccattcgttttcccttttcccacgacgtatgagtgacattccaaacgacgccgttacgtaaattt 36059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 1419172 - 1419207
Alignment:
Q  197 gaacctattttaaaaatagaaccgaacctcctattt 232  Q
    ||||||||||||||||||||||||||||||||||||    
T  1419172 gaacctattttaaaaatagaaccgaacctcctattt 1419207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 29480469 - 29480386
Alignment:
Q  165 tacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||||| |||||||||| |||||||||| |  |  |||||||||||||||||||| | |||| |||||||||| ||||| ||||    
T  29480469 tacacaaaaagaattgcattttgattttacgggggcctattttaaaaatagaaccaagcctcatatttcataggaacgggcctg 29480386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 26151734 - 26151658
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  26151734 cgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 26151658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 36059748 - 36059660
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||| ||| ||||| | ||| ||||||||||| ||||| || | |||||||||||||| |||  ||| ||||||||||||||| |||||    
T  36059748 gaagtttagctacaaaaaaaaaattgcgtttttattttactggtacctattttaaaaaaagagtcgagcctcctatttcatagcaacgg 36059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 36438337 - 36438264
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  36438337 cataaaccattcgttttcccttttcctacgacgtaggagtgacattccaaatgacaccgttaggtaaatttcac 36438264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7366763 - 7366843
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  7366763 cgcataaaccattcattttcccctttcctgcgacgtaggagtgacattccaaacgacaccgtaaggtaaatttcacctctc 7366843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 40737988 - 40737908
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||| ||||    
T  40737988 cgcataaactattcgttttcccctttcctacgacgtaggagtgacatttcaaatgacaccgttaggtaaatttcacctctc 40737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26633439 - 26633519
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  26633439 cgcataaaccattcatttttccctttcccacgacgtatgagtgacattccaaacgacaccgttaagtaaatttcacctctc 26633519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 7370013 - 7370094
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    ||||||||  ||||||  |||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||    
T  7370013 gaagcttagttacacaagaagaattgcgttttgattttactagatc-tattttaaaaatagaaccgagcctcctatttcatag 7370094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 18895385 - 18895334
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaa 61  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  18895385 cgcataaacaattcgttttccccttacctacgacgtaggagtgacattccaa 18895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 32956851 - 32956927
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||||||||||| || ||| | ||||||| | ||||||||  || ||||||||||||||||    
T  32956851 cgcataaaccattcgttttcccctttcccacaacggatgagtgacaaatccaaacgacactgttaggtaaatttcac 32956927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 40737816 - 40737760
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcata 236  Q
    ||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||    
T  40737816 gcgtttttattttactcgaatctattttaaaaatagaaccgagcctcctatttcata 40737760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 40841233 - 40841157
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||||||||||||||| ||| || |||||| | ||||||||  ||| ||||| |||||||||    
T  40841233 cgcataaaccattcgttttcccctttcctacaacggagaagtgacaaatccaaacgagaccattaggaaaatttcac 40841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 36438194 - 36438117
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttc 233  Q
    |||||||| ||||||| ||| |||||| |||| ||||| ||    |||||||||||||||||||||| |||||||||||    
T  36438194 gaagcttagctacacacaaa-aattgcatttttattttactgaggcctattttaaaaatagaaccgagcctcctatttc 36438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 4100228 - 4100264
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  4100228 ctattttaaaaagagagccgaacctcctatttcatag 4100264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 12251275 - 12251199
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  12251275 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgtcaccgttagataaatttcac 12251199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 33419104 - 33419028
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| || ||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  33419104 cgcataaaccattcgttttaccattttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 33419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 40001553 - 40001466
Alignment:
Q  156 aagcttaactacacagaaagaattgcgttttgattttcctagaa-cctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    ||||||||||||||| ||| |||||| |||| |||||  | ||| ||||||||||| | |||  |||||||||||||||||||| ||||    
T  40001553 aagcttaactacacaaaaa-aattgcatttttattttattggaaacctattttaaatagagagtcgaacctcctatttcatagagacgg 40001466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3628735 - 3628655
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  3628735 cgcataaaccattcgtttttccgtttcctacgacgtaggagtgacattccaaacgacacagttaggtaaatttcacctctc 3628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 36515143 - 36515069
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  36515143 cgcataaatcatttgttttcccatttcctacgacgtaggagtgacattccaaacgacaccgttagataaatttca 36515069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 42076185 - 42076260
Alignment:
Q  9 ccgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  42076185 ccgcataaactattcgttttccccttttctacga-gtaggagtgacattccaaatgacaccgttaggtaaatttcac 42076260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 35875147 - 35875216
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    ||||||| ||||| || ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35875147 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcatagtaacggccctgc 35875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 29372433 - 29372508
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||| ||||||||||| | |||| | |||||||||| ||||||||  ||| |||||||||||||||    
T  29372433 cgcataaaccattcattttcccctttgccacgatgaaggagtgacaatccaaacgacaccattaggtaaatttcac 29372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 42076330 - 42076408
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttca 234  Q
    |||||||| ||||||| |||||||||||||||||||| | | |  |||||||||| |||||||||||||||| |||||||    
T  42076330 gaagcttatctacacaaaaagaattgcgttttgatttac-tggggcctattttaacaatagaaccgaacctcttatttca 42076408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 32098165 - 32098085
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| |||| || ||  ||||||||| | ||||||||  ||||||| ||||||||||||||||    
T  32098165 gcataaaccattcgttttccccattcccacaacagaggagtgacgaatccaaacgacaccgttacgtaaatttcacttctc 32098085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 33453021 - 33453064
Alignment:
Q  200 cctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||    
T  33453021 cctattttaaaaagagaactgaacctcctatttcataggaacgg 33453064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 18112378 - 18112424
Alignment:
Q  188 attttcctagaacctattttaaaaatagaaccgaacctcctatttca 234  Q
    ||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  18112378 attttactaggacctattttaaaaagagagccgaacctcctatttca 18112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 36514978 - 36514905
Alignment:
Q  174 agaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||||||||||| ||  |  ||| |||||||||| |||| ||||||||||||||||| ||||| ||||    
T  36514978 agaattgcgttttgattttactgaagtctaatttaaaaata-aaccaaacctcctatttcataggaacggccctg 36514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 44665033 - 44664957
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | |||||||| |||| |||| ||||||||||    
T  44665033 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgataccattagataaatttcac 44664957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 42009248 - 42009170
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||| |||||||||| ||||    
T  42009248 cataaaccattcgttttcccctttcctacgacgtaagagtgacattccaaacgaaatcgttagataaatttcacctctc 42009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 46904819 - 46904898
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||  |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  46904819 gcataaaccttttatttttccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 46904898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 50677302 - 50677228
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  || ||||| |||||||||    
T  50677302 cgcataaacaattcgttttcccctttcctacgatgtaggagtgacattccaaacgaaactgttagataaatttca 50677228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 7767144 - 7767222
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||||| |  || |||||||||||||||| ||||    
T  7767144 cataaactattcgttttcccatttcctaagacgtaggagtgacattccaaatgacacagttaggtaaatttcacatctc 7767222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 46904963 - 46905051
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||  ||||||| ||| |||||  |||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  46904963 gaagcttcgctacacataaaaaattgaatttttattttactggaacctattttaaaaatagaaccgagcctcctatttcataggaacgg 46905051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 51147014 - 51147085
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    |||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||  ||||||||||||||||    
T  51147014 cgcataaaccattcgttttcccttttc-tacgacatagaagtgacattccaaacgacaccgttaggtaaattt 51147085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 36538174 - 36538120
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacg 64  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  36538174 cgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 36538120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 27303436 - 27303501
Alignment:
Q  183 ttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||    
T  27303436 tttttattttactagaacctattttaaaaatagaaccgagcctcctatttcattggaacggccctg 27303501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 7767287 - 7767375
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| || |||||||| || || || |  |||||||||||||||||||||| ||||||||||||||| |||||    
T  7767287 gaagcttagctacacacaaaaaaatgcgtttttatcttacttgggcctattttaaaaatagaaccgagcctcctatttcataggaacgg 7767375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 27303263 - 27303341
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||    
T  27303263 cgcataaactatttgttttccc-tttcctacgacgtaggagtgacatt-caaacgacaccattaggtaaatttcacctctc 27303341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 42009126 - 42009039
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||||||||||| ||| | |||  |||| ||||| ||  | | ||||||||||||||||||||||||| |||||||||| ||||    
T  42009126 gaagcttaactacacaaaaaaatttgtatttttattttactgaagcttattttaaaaatagaaccgaacctcatatttcataggaacg 42009039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 51147205 - 51147252
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  51147205 ctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 51147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 52655110 - 52655034
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | | |||||| ||||||||| ||||||||||    
T  52655110 cgcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgataccgttagataaatttcac 52655034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15987276 - 15987321
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgaca 55  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||    
T  15987276 cgcataaaccattcgtttttccctttcccacaacggaggagtgaca 15987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 48626827 - 48626779
Alignment:
Q  200 cctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||| | |||||||| |||||||||||||||  |||||||||    
T  48626827 cctattttaaatagagaaccgagcctcctatttcatagggacggtcctg 48626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 35653968 - 35653888
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |  |||||||| |||||||||| ||||    
T  35653968 cgcataaactattcgtttttccctttcctacgacgtaggagtgacatttcaaatgacaccgttagataaatttcacctctc 35653888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 10575511 - 10575437
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||| || |  ||||| ||||||||||||    
T  10575511 cgcataaaccattcgttttcccctttcccacgacggaggagtgacaatccgaatgacaccgtcaggtaaatttca 10575437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22423764 - 22423837
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||| |||||||||| || |||| |||||| ||||||||||||||||||||  |||||||| ||||||||||    
T  22423764 cataaatcattcgtttttccatttcatacgacataggagtgacattccaaacgacaccgttagataaatttcac 22423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 24449347 - 24449416
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    ||||||| ||||| || ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24449347 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcatagtaacggccctgc 24449416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 35653823 - 35653735
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||||||||||| ||| || || ||||| ||||| || |  ||||| |||||||||||||||| ||| ||||||||||| |||||    
T  35653823 gaagcttaactacacacaaaaaaatgtgtttttattttactcgggcctatcttaaaaatagaaccgagccttctatttcataggaacgg 35653735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 5545405 - 5545481
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||||||| |||  || ||| ||||||||| | | ||||||  |||||||||||||||||||    
T  5545405 cgcataaaccattcgttttcccccttctcacaacggaggagtgacaaattcaaacgacaccgttaggtaaatttcac 5545481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 21791535 - 21791456
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||| |||| ||||||||| |||||| | |||||||| ||||||||  |  |||||||||||||||| ||||    
T  21791535 cgcataaaccatttgttt-cccctttcccacgacgaatgagtgacaatccaaacgacattgttaggtaaatttcacctctc 21791456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 22423938 - 22423976
Alignment:
Q  199 acctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  22423938 acctattttaaaaatagaaccgagactcctatttcatag 22423976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 23256825 - 23256911
Alignment:
Q  160 ttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||| ||| |||| |||||| ||||| ||||  ||||||||||||| ||| |||| |||||||||||| || ||| ||||||    
T  23256825 ttaactacacaaaaa-aattacgtttt-attttactagggcctattttaaaaagagagccgagcctcctatttcacaggaacagtcctg 23256911  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 41038327 - 41038403
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  41038327 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 41038403  T

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Target: scaffold0564 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 1138 - 1214
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | ||||||||  |||||||| ||||||||||    
T  1138 cgcataaaccattcgttttacccttttccacaacataggagtgacaaatccaaacgacaccgttagataaatttcac 1214  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 22792 - 22716
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | | ||||||  |||||||| ||||||||||    
T  22792 cgcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgacaccgttagataaatttcac 22716  T

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