View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_37 (Length: 281)
Name: NF11885_low_37
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 33284919 - 33284653
Alignment:
| Q |
1 |
agtatcacctgaatcacggagcaaacctccaaagcctgagcagccgggactcccaagactactctcataaacattgagaatcgtagcttccatacgggaa |
100 |
Q |
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|||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33284919 |
agtaccacccgaatcacggagcgaacctccaaagcctgagcagccgtgactcccaagactactctcataaacattgagaattgtagcttccatacgggaa |
33284820 |
T |
|
| Q |
101 |
gggtgccaagaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtcgagagaactaagattgctcccaacattatgtcgcagttga |
200 |
Q |
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||||||||||||||||||||||| | || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33284819 |
gggtgccaagaggtctagcgttgctaatagcgagagagaacactactacctaaggacgtcgagagaactaagattgctcccaacattatgtcgcagttga |
33284720 |
T |
|
| Q |
201 |
tgatagctaacctgctcattaccaagaaacaccgcattacgtgctttccaaatacaccagatacctg |
267 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33284719 |
tgatagctaacctgctcattaccaagacacaccgcattacgtgctttccaaatacaccagatacctg |
33284653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 19722353 - 19722297
Alignment:
| Q |
70 |
aacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttg |
126 |
Q |
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|||||| ||||| ||||||| |||| |||| ||||||||||| ||| |||||||||| |
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|
| T |
19722353 |
aacattaagaattgtagcttgcatatgggaggggtgccaagaagtcaagcgttgttg |
19722297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 42914331 - 42914082
Alignment:
| Q |
11 |
gaatcacggagcaaacctccaaagcctgagcagccgggactcccaagactactctcataaacattgagaatcgtagcttccatacgggaagggtgccaag |
110 |
Q |
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||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
42914331 |
gaatcacggagcacacctccaaagcctgagcgaccaggactcccaagactactcccatcaacattgagaattgtagcttccatacgagaagggtaccaag |
42914232 |
T |
|
| Q |
111 |
aggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtcga--gagaactaagattgctcccaacattatgtcgcagttgatgatagct |
208 |
Q |
| |
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||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
42914231 |
aggtccagcgttgttgacggcgagagaggctactgctacccaaggacgtcgagagagaactaagatagctcccaatattatgtcgcatttgatgatagcc |
42914132 |
T |
|
| Q |
209 |
aacctgctcattaccaagaaacaccgcattacgtgctttccaaatacacc |
258 |
Q |
| |
|
||| ||||||||| ||||| |||||||| | | ||||||||||||||||| |
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|
| T |
42914131 |
aacatgctcattaacaagacacaccgcagtccatgctttccaaatacacc |
42914082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 29312920 - 29312726
Alignment:
| Q |
70 |
aacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtcga--gagaa |
167 |
Q |
| |
|
|||||| ||||| ||||| | ||||||||| ||||||||||| ||| |||||||||| | |||||| || || | |||||| ||||| || ||||| |
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| T |
29312920 |
aacattaagaattgtagcatgcatacgggaggggtgccaagaagtccagcgttgttgcgagtgagagacaagacctccacccaaagacgttgaaagagaa |
29312821 |
T |
|
| Q |
168 |
ctaagattgctcccaacattatgtcgcagttgatgatagc-taacctgctcattaccaagaaacaccgcattacgtgctttccaaatacaccaga |
261 |
Q |
| |
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||||||| ||| |||||||| | | |||||||||| |||| ||||||| |||||||||||| ||| ||||| | |||||||||||||||||||| |
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|
| T |
29312820 |
ctaagatagcttccaacattgtttggcagttgatggtagcataacctgttcattaccaagacacattgcattccatgctttccaaatacaccaga |
29312726 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 4870502 - 4870655
Alignment:
| Q |
70 |
aacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtc--gagagaa |
167 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
4870502 |
aacattgagaattgtaacttccatacgagaagggtgccaagaggtccagcattgttgcgggcgagagagaacactgtcacccaaggacgtcgagagagaa |
4870601 |
T |
|
| Q |
168 |
ctaagattgctcccaacattatgtcgcagttgatgatagctaacctgctcatta |
221 |
Q |
| |
|
||||||| ||||||||||| || |||| |||||||||| |||||||||||||| |
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|
| T |
4870602 |
ctaagatatctcccaacattgtgccgcaattgatgatagttaacctgctcatta |
4870655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 2977018 - 2976819
Alignment:
| Q |
70 |
aacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtcga--gagaa |
167 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||| | ||||||||| ||| |||| ||||| |||||||| || || | |||||| || || || ||||| |
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|
| T |
2977018 |
aacattaagaattgtagcttgcatacgggaggagtgccaagaagtccagcggtgttgcaggcgagagtcaagacctccacccaaagatgttgaaagagaa |
2976919 |
T |
|
| Q |
168 |
ctaagattgctcccaacattatgtcgcagttgatgatagctaacctgctcattaccaagaaacaccgcattacgtgctttccaaatacaccagatacctg |
267 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
2976918 |
ctaagatggctcccaacattgtgtcgcaattgatgatagctaacctgttcattaccaagacacattgcattacgtgctttccaaatacaccagatgcctg |
2976819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 3632174 - 3632378
Alignment:
| Q |
48 |
gactcccaagactactctcataaacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgct |
147 |
Q |
| |
|
|||| |||| ||| ||| ||| || ||||| |||| |||||||||| |||||||| ||||||||||| | | || || |||||||||||||||| || |
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|
| T |
3632174 |
gactaccaaaactgctcccatcaatattgaaaatcatagcttccatgcgggaaggaggccaagaggtccatcaatgctgcgggcgagagagaacacttct |
3632273 |
T |
|
| Q |
148 |
acccaaggacgtc--gagagaactaagattgctcccaacattatgtcgcagttgatgatagctaacctgctcattaccaagaaacaccgcattacgtgct |
245 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||| ||| ||||| ||||||||||| ||| ||||||||||| ||| | ||| ||||| ||||| |
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|
| T |
3632274 |
acccaaggacgtcaagagagaactaaggtagctcccaatattgtgtcgtagttgatgataactagcctgctcattatcaaaatacattgcattctgtgct |
3632373 |
T |
|
| Q |
246 |
ttcca |
250 |
Q |
| |
|
||||| |
|
|
| T |
3632374 |
ttcca |
3632378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 32532995 - 32533146
Alignment:
| Q |
9 |
ctgaatcacggagcaaacctccaaagcctgagcagccgggactcccaagactactctcataaacattgagaatcgtagcttccatacgggaagggtgcca |
108 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||| ||| ||||| |||| ||| ||| ||| |||||||||||||||||||||||||| | || ||||||| |
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|
| T |
32532995 |
ctgaattacggagaacacctccaaagcctgagcggccaggactaccaaaactgctcccatcaacattgagaatcgtagcttccatacagtaaaggtgcca |
32533094 |
T |
|
| Q |
109 |
agaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtc |
160 |
Q |
| |
|
| ||||| | |||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
32533095 |
aaaggtccaacgttgttgtgggcgagagagaacactgctacccaatgacgtc |
32533146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 12288259 - 12288447
Alignment:
| Q |
70 |
aacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgctacccaaggacgtcga--gagaa |
167 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||| ||||||||||| ||| | |||||||| | ||||||| || || | |||||| ||||| || ||||| |
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|
| T |
12288259 |
aacattaagaattgtagcttgcatacgggaggggtgccaagaagtccaacgttgttgcagacgagagacaagacctccacccaaagacgttgaaagagaa |
12288358 |
T |
|
| Q |
168 |
ctaagattgctcccaacattatgtcgcagttgatgatagctaacctgctcattaccaagaaacaccgcattacgtgctttccaaataca |
256 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||||||||| |
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|
| T |
12288359 |
ctaagatagctcccagcattgtgtcgcagttgatgatagctaacatgttcattaccaagacacattgcattctgtgctttccaaataca |
12288447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 37036267 - 37036028
Alignment:
| Q |
25 |
acctccaaagcctgagcagccgggactcccaagactactctcataaacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgt |
124 |
Q |
| |
|
||||||||||||||||| |||||||| | | ||| || ||| ||||||||||||||||| ||||||| |||||| ||||||||||||| | |||||| |
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|
| T |
37036267 |
acctccaaagcctgagcgaccgggactatcgaaactgcttccatcaacattgagaatcgtagtttccatatgggaagagtgccaagaggtccatcgttgt |
37036168 |
T |
|
| Q |
125 |
tgatggcgagagagaacactgctacccaaggacgtc--gagagaactaagattgctcccaacattatgtcgcagttgatgatagctaacctgctcattac |
222 |
Q |
| |
|
| | |||| ||||||||| ||| |||||| || |||||||||||||| |||||||||||| ||| | | ||||||||| |||||||||| ||||| |
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|
| T |
37036167 |
ggcggatgagaaagaacactgtcaccaaaggacatcaagagagaactaagatagctcccaacattgtgttgtaattgatgatatctaacctgcttattac |
37036068 |
T |
|
| Q |
223 |
caagaaacaccgcattacgtgctttccaaatacaccagat |
262 |
Q |
| |
|
||||| ||| | |||| |||||||||| |||||| |||| |
|
|
| T |
37036067 |
caagacacatcacattttgtgctttccagatacactagat |
37036028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 46905799 - 46905637
Alignment:
| Q |
53 |
ccaagactactctcataaacattgagaatcgtagcttccatacgggaagggtgccaagaggtctagcgttgttgatggcgagagagaacactgctaccca |
152 |
Q |
| |
|
|||| ||| ||| ||| |||||| ||||| ||||||| ||||||||| ||||||||||| ||| | |||||||| |||| ||| || | ||| ||| |
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|
| T |
46905799 |
ccaaaactgctcccattaacattaagaattgtagcttgcatacgggaggggtgccaagaagtccaacgttgttgcgagcgatagataagatctctatcca |
46905700 |
T |
|
| Q |
153 |
aggacgtcg--agagaactaagattgctcccaacattatgtcgcagttgatgatagctaacct |
213 |
Q |
| |
|
| |||| | | |||| ||| || |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
46905699 |
aaaacgttggaaaagaaataaaatagctcccaacattgtgtcgcaattgatgatagctaacct |
46905637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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