View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_39 (Length: 271)
Name: NF11885_low_39
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_39 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 1992028 - 1991781
Alignment:
| Q |
8 |
caatgagataaatttaattagatca-aactaattagatacaatttctcagattaggcacaaccaaacacactcaaaacggtgtatgtactatgtttcaag |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1992028 |
caatgagataaatttaattagatcataactaattagatacaacttctcagattaggcacaaccaaacacactcaaaacggtgtatgtactatgtttcaag |
1991929 |
T |
|
| Q |
107 |
tccaacaattccgacaaactgtgtataaatttcaacagtaatcactaccaacccaaaatctaaataaagctatacactaatgtataacatagaagcaacg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1991928 |
tccaacaattccgacaaactgtgtataaatttcaacagtaatcactaccaacccaaaaactaaataaagctatacactaatgtataacatagaagcaacg |
1991829 |
T |
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| Q |
207 |
----caagtaaagaacttgctgatttatatgacactagatctcagcta |
250 |
Q |
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| T |
1991828 |
tagagaagtaaagaacttgctgatttatatgacactagatctcagcta |
1991781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 44613462 - 44613283
Alignment:
| Q |
8 |
caatgagataaatttaattagatca-aactaattagatacaatttctcagattaggcacaaccaaacacactcaaaacggtgtatgtactatgtttcaag |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44613462 |
caatgagataaatttaattagatcataactaattagatacaacttctcagattaggcacaaccaaacacactcaaaacggtgtatgtactatgtttcaag |
44613363 |
T |
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| Q |
107 |
tccaacaattccgacaaactgtgtataaatttcaacagtaatcactaccaacccaaaatctaaataaagctatacactaa |
186 |
Q |
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| T |
44613362 |
tccaacaattccgacaaactgtgtataaatttcaacagtaatcactaccaacccaaaaactaaataaagctatacactaa |
44613283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 44612374 - 44612332
Alignment:
| Q |
208 |
aagtaaagaacttgctgatttatatgacactagatctcagcta |
250 |
Q |
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| T |
44612374 |
aagtaaagaacttgctgatttatatgacactagatctcagcta |
44612332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 9711 - 9753
Alignment:
| Q |
208 |
aagtaaagaacttgctgatttatatgacactagatctcagcta |
250 |
Q |
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| T |
9711 |
aagtaaagaacttgctgatttatatgacactagatctcagcta |
9753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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