View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_40 (Length: 258)

Name: NF11885_low_40
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_40
NF11885_low_40
[»] chr7 (14 HSPs)
chr7 (1-166)||(3617718-3617883)
chr7 (1-163)||(29071639-29071801)
chr7 (1-166)||(29058411-29058576)
chr7 (1-166)||(29069177-29069342)
chr7 (37-166)||(29078408-29078537)
chr7 (18-124)||(29072884-29072990)
chr7 (1-143)||(29111123-29111265)
chr7 (1-113)||(29098134-29098246)
chr7 (1-112)||(28956624-28956735)
chr7 (2-121)||(29113378-29113497)
chr7 (6-166)||(3618768-3618928)
chr7 (6-124)||(29115992-29116110)
chr7 (18-112)||(29101859-29101953)
chr7 (82-166)||(29064475-29064559)
[»] chr4 (3 HSPs)
chr4 (1-163)||(11851371-11851533)
chr4 (1-154)||(11854094-11854247)
chr4 (18-166)||(11850178-11850326)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 3617718 - 3617883
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3617718 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctcttt 3617817  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617818 gttacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 3617883  T

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Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29071639 - 29071801
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  29071639 taagtgtgaggtatgccttagtatgagtagacactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctcttt 29071738  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagc 163  Q
     || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29071739 gttgcattgtcccgatggagctttctttcccctgattctaccgtttggacgacacttttgagc 29071801  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29058411 - 29058576
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  29058411 taagtgtgaggtatgctttagtatgagcagacaccgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctcttt 29058510  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
     || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29058511 gttgcattgtccagatggagctttctttcccctgattctaccgtttggacgacacttttgagcttc 29058576  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29069177 - 29069342
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||| ||||| ||||| || || |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||     
T  29069177 taagagtgagatatgcttttgtgtgagtagacactgatggagaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttg 29069276  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
    |||||||||||| |  |||||||||||||| || ||||||||| | |||||||| || ||||||||    
T  29069277 attacattgtcctggaggagctttctttcctctaattctaccgcttggacgacagttctgagcttc 29069342  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 29078408 - 29078537
Alignment:
Q  37 atggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatggagctttctttcccctgat 136  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |  |||||||||||||| || ||    
T  29078408 atggtgaacatacataagttgtgtacatttttccttctacacaacaatcagaatcattctcttgattgcattgtcctggaggagctttctttcctctaat 29078507  T
Q  137 tctaccgttcggacgacacttttgagcttc 166  Q
    ||||||| | |||||||| || ||||||||    
T  29078508 tctaccgcttggacgacaattctgagcttc 29078537  T

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Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 29072990 - 29072884
Alignment:
Q  18 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 117  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||| || |    
T  29072990 ttagtgtgagtagatactgatggtgaacatttataagttgtgtacatttttccctgtacacaacaatcagagtcattctcctgattacattgtccggaag 29072891  T
Q  118 gagcttt 124  Q
    |||||||    
T  29072890 gagcttt 29072884  T

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Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29111123 - 29111265
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||| ||||| ||||| || || ||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  29111123 taagagtgagatatgctttggtgtgagtggacactgatggtgaacatacataagttgtgtacatttttccttgtacgcaacaatcagaatcattctcttg 29111222  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccg 143  Q
    ||| |||| ||| |  |||||||||||||| || |||||||||    
T  29111223 attgcattttcctggaggagctttctttcctctaattctaccg 29111265  T

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Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 29098246 - 29098134
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    ||||| |||| ||||| ||||| | |||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||     
T  29098246 taagtatgagatatgctttagtgtaagtagacactgatggcgaacattcataagttgtatacatttgtccttgtacacaacaatcagaatcattctcttg 29098147  T
Q  101 attacattgtcca 113  Q
    ||| |||||||||    
T  29098146 attgcattgtcca 29098134  T

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Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28956735 - 28956624
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||| ||||| |||||||| || | |||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  28956735 taagagtgagatatgccttggtgtaagtagacactgctggagaacattcataagttgtgtacattttttcttgtacacaacaatcagaatcgttctcttg 28956636  T
Q  101 attacattgtcc 112  Q
    ||||||||||||    
T  28956635 attacattgtcc 28956624  T

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Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 29113497 - 29113378
Alignment:
Q  2 aagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttta 101  Q
    ||||||||| ||||| ||||| | ||||||||||||||| |||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||| |    
T  29113497 aagtgtgagatatgctttagtgtaagtagatactgatggcgaacattcataagttgtacacatttgtccttgtacccaacaatcagaatcattctcttga 29113398  T
Q  102 ttacattgtccagatggagc 121  Q
    || |||||| |||| |||||    
T  29113397 ttgcattgtgcagaaggagc 29113378  T

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Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 3618928 - 3618768
Alignment:
Q  6 gtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattac 105  Q
    ||||| ||||| ||||| ||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |  || |    
T  3618928 gtgagatatgctttagtgtgagtagacgctgacggtgaacattgataagttgtgtacatttttccttgtacacaacaatcagagtcattctcctggttgc 3618829  T
Q  106 attgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
    ||||||| || |||||||| | |||  | ||||||||  | |||||||||| ||| |||||    
T  3618828 attgtccggaaggagctttttctcctttaattctaccacttggacgacactgttgggcttc 3618768  T

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Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 29116110 - 29115992
Alignment:
Q  6 gtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattac 105  Q
    ||||| ||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||| || |  || |    
T  29116110 gtgagatatgctttagtgtgagtagatactgatggtgagcatttataagttgtgtacatttttccttgcacacaacaatctgaatcattttcctggttgc 29116011  T
Q  106 attgtccagatggagcttt 124  Q
    ||||||| || ||||||||    
T  29116010 attgtccggaaggagcttt 29115992  T

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Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 29101953 - 29101859
Alignment:
Q  18 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtcc 112  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||| |||||||| |  |||||||||||    
T  29101953 ttagtgtgagtagatactgatggtgagcatttatatgttgtgtacatttttccctgtacacaacaatcagagtcattctcctggttacattgtcc 29101859  T

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Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 29064475 - 29064559
Alignment:
Q  82 aatcagaatcattctctttattacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
    ||||||| ||||||||||| || |||||| ||||||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  29064475 aatcagagtcattctctttgttgcattgttcagatggtgctttctttcccctcattctaccatttggacgacacttttgagcttc 29064559  T

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Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 11851533 - 11851371
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  11851533 taagtgtgaggtatgccttagtatgagtagacactgatggtgaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctcttt 11851434  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgacacttttgagc 163  Q
     || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11851433 gttgcattgtcccgatggagctttctttcccctgattctaccgtttggacgacacttttgagc 11851371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 11854247 - 11854094
Alignment:
Q  1 taagtgtgaggtatgccttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctcttt 100  Q
    |||| ||||| ||||| || || |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||     
T  11854247 taagagtgagatatgcttttgtgtgagtagacactgatggagaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttg 11854148  T
Q  101 attacattgtccagatggagctttctttcccctgattctaccgttcggacgaca 154  Q
    ||| |||||||| |  |||||||||||||| || ||||||||| | ||||||||    
T  11854147 attgcattgtcctggaggagctttctttcctctaattctaccgcttggacgaca 11854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 11850178 - 11850326
Alignment:
Q  18 ttagtatgagtagatactgatggtgaacattcataagttgtgtacatttttccttgtacacaacaatcagaatcattctctttattacattgtccagatg 117  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||| |  ||||||||||  || |    
T  11850178 ttagtgtgagtagatactgatggtgaacatttataagttgtgtacatttttccctgtacacaacaatcaaagtcattctcctggttacattgtcttgaag 11850277  T
Q  118 gagctttctttcccctgattctaccgttcggacgacacttttgagcttc 166  Q
    ||||||| | |||  | ||||||||  | |||||||||| |||||||||    
T  11850278 gagctttttctcctttaattctaccacttggacgacactgttgagcttc 11850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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