View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_42 (Length: 255)
Name: NF11885_low_42
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 8441289 - 8441526
Alignment:
| Q |
3 |
atctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaagacttttcttatgaagtttgtccatgtgcgaaacaatcatgt |
102 |
Q |
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| T |
8441289 |
atctacgtctcatttcaatttcgttgttacaaatttaccataatttaatgcaaacaaagacttttcttatgaagtttgtccatgtgcgaagcaatcacgt |
8441388 |
T |
|
| Q |
103 |
ttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgatatttggggtccattctccataccatctaataatttatcac |
202 |
Q |
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| T |
8441389 |
ttacctttttcctcaagaacaactaattcatctcattgttttgaactaattctcgttgatatttggggtccattctacataccatctaataattgatcac |
8441488 |
T |
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| Q |
203 |
actattttctaaccattgtcgatgattatacgtgatgt |
240 |
Q |
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| T |
8441489 |
actattttctaaccattgtcgatgattattcgcgatgt |
8441526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 35251656 - 35251419
Alignment:
| Q |
3 |
atctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaagacttttcttatgaagtttgtccatgtgcgaaacaatcatgt |
102 |
Q |
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| T |
35251656 |
atctatgtctcgtttcaatttcattcttaaaaattcaccagaaattaatgcaaacaaagatttttcttgtgaagtttgtccacgtgcaaaacaaccacgt |
35251557 |
T |
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| Q |
103 |
ttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgatatttggggtccattctccataccatctaataatttatcac |
202 |
Q |
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| T |
35251556 |
ttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttaatatttggggtccattctccattccatctaataatggatcac |
35251457 |
T |
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| Q |
203 |
actattttctaaccattgtcgatgattatacgtgatgt |
240 |
Q |
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| T |
35251456 |
gctattttctaaccattgtcgatgattattcgcgatgt |
35251419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 1998268 - 1998495
Alignment:
| Q |
3 |
atctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaagacttttcttatgaagtttgtccatgtgcgaaacaatcatgt |
102 |
Q |
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| T |
1998268 |
atctatgtctcgtttcaatttcattgttaaaaattcaccagaaattaatgcaaacaaagatttttcttgtgaagtttgtccacgtgcaaaacaaccacgt |
1998367 |
T |
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| Q |
103 |
ttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgatatttggggtccattctccataccatctaataatttatcac |
202 |
Q |
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| T |
1998368 |
ttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttgatatttggggtccattctccattccatctaataatggatcac |
1998467 |
T |
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| Q |
203 |
actattttctaaccattgtcgatgatta |
230 |
Q |
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| T |
1998468 |
gctattttctaaccattgtcgatgatta |
1998495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 986755 - 986528
Alignment:
| Q |
3 |
atctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaagacttttcttatgaagtttgtccatgtgcgaaacaatcatgt |
102 |
Q |
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|
||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||| ||||||||||||| |||| |||||| || || |
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| T |
986755 |
atctatgtctcgtttcaatttcattgttaaaaattcaccagaaattaatgcaaacaaagatttttcttgtgaagtttgtccacgtgcaaaacaaccacgt |
986656 |
T |
|
| Q |
103 |
ttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgatatttggggtccattctccataccatctaataatttatcac |
202 |
Q |
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| T |
986655 |
ttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttgatatttggggtccattctccattccatctaataatggatcac |
986556 |
T |
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| Q |
203 |
actattttctaaccattgtcgatgatta |
230 |
Q |
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| T |
986555 |
gctattttctaaccattgtcgatgatta |
986528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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