View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_low_43 (Length: 254)

Name: NF11885_low_43
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_low_43
NF11885_low_43
[»] chr7 (13 HSPs)
chr7 (19-254)||(3617430-3617665)
chr7 (19-254)||(29058123-29058358)
chr7 (19-253)||(29071351-29071585)
chr7 (19-250)||(28956792-28957023)
chr7 (36-254)||(29068906-29069124)
chr7 (21-250)||(3618990-3619219)
chr7 (23-254)||(29110839-29111070)
chr7 (21-253)||(29073061-29073293)
chr7 (23-253)||(29078088-29078318)
chr7 (21-253)||(29102024-29102256)
chr7 (21-229)||(29116193-29116401)
chr7 (36-253)||(29098300-29098517)
chr7 (27-254)||(29066732-29066959)
[»] chr4 (3 HSPs)
chr4 (19-253)||(11851587-11851821)
chr4 (36-254)||(11854300-11854518)
chr4 (21-253)||(11849875-11850107)
[»] chr3 (1 HSPs)
chr3 (21-178)||(24241051-24241202)
[»] chr8 (1 HSPs)
chr8 (23-109)||(11654929-11655015)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 3617430 - 3617665
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617430 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 3617529  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617530 agagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 3617629  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  3617630 gaaagtgcaacgactggtgtatcatcagaatgatac 3617665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 29058123 - 29058358
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29058123 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgggcaaggaggttgataatcatgttcttcatcacatcccattgt 29058222  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  29058223 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaattttgttgagacatctgctcttatcgttgaaccatcctgtg 29058322  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||||||||||||| || |||||||||||||||    
T  29058323 gaaagtgcaacgactggagtgtcatcagaatgatac 29058358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 29071351 - 29071585
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29071351 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccatcgt 29071450  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  29071451 agagtcacactcatcaaccacagtggccactacacttcttccattggcacttatggtaatcttgttgagacatctgctcttgtcgttgaaccatccggtg 29071550  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||||| ||||| || ||||||||||||||    
T  29071551 gaaagtgcaacaactggagtgtcatcagaatgata 29071585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 28957023 - 28956792
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    ||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28957023 cttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatccctttgt 28956924  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     ||||||||||||||||| ||| ||||||| |||||||| ||||| ||||| || ||||| || || ||||| ||||||| || |||||||||||| |||    
T  28956923 ggagtcacactcatcaacaaccatggccaccacacttttcccattcgcactaattgtaatgtttttgagacacctgctctcgtggttgaaccatccggtg 28956824  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatg 250  Q
    ||||||||||| ||||| || |||||||||||    
T  28956823 gaaagtgcaacaactggagtgtcatcagaatg 28956792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 29068906 - 29069124
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||    
T  29068906 gctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaa 29069005  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||||||||||| |||||||||||||| ||||| || || |||||||||  |||||||||||| || || |||||||| || ||    
T  29069006 caaccatggccaccacactttttccattcgcacttatggtaatgttgttgaggcacctgctcttgcggttgaaccatccggttgagagtgcaacaacggg 29069105  T
Q  236 tgtatcatcagaatgatac 254  Q
     || ||||| |||||||||    
T  29069106 agtgtcatcggaatgatac 29069124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 3619219 - 3618990
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||||||||||||||||| |||||||||||| || |    
T  3619219 tgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttggtaatcatgttctttatcacatcccatcgtag 3619120  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    |||| ||||||||||| |||||||| || |||||| ||||||| || || |||||||| |||||||||||||| || |||| |||||||||||| |||||    
T  3619119 agtcgcactcatcaacaaccgtggcaaccacacttcttccattcgcgctgatggtaattttgttcagacatctacttttgttgttgaaccatccagtgga 3619020  T
Q  221 aagtgcaacgactggtgtatcatcagaatg 250  Q
    ||||||||| || || || |||||||||||    
T  3619019 aagtgcaacaacaggagtgtcatcagaatg 3618990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 29110839 - 29111070
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgag 122  Q
    ||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||| | ||||||||||||| || | ||     
T  29110839 aggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttggacacggtggttggtagtcatgctgttcatcacatccctttctagaa 29110938  T
Q  123 tcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaa 222  Q
    || ||||| ||||| ||| ||||||| ||| || ||||||| ||||| || ||||| ||||| ||||| ||||| || | |||||||||||| |||||||    
T  29110939 tcgcactcgtcaacaaccatggccacgacatttcttccattagcactgattgtaatgttgtttagacacctgcttttatggttgaaccatccggtggaaa 29111038  T
Q  223 gtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||| || || || |||||||||||||||    
T  29111039 gtgcaacaacaggagtgtcatcagaatgatac 29111070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 29073293 - 29073061
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29073293 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29073194  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| ||||||||||||  | ||    
T  29073193 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccactaga 29073094  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| ||||| || ||||||||||||||    
T  29073093 aagtgcaacaactggagtgtcatcagaatgata 29073061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 29078088 - 29078318
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgag 122  Q
    ||||||||| || |||||||||||||| || |||||||||||||||||||||| |||||| |||||||| ||||| | ||||||||||||| || | ||     
T  29078088 aggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgtacaaggtggttggtagtcatgctgttcatcacatccctttctagaa 29078187  T
Q  123 tcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaa 222  Q
    || ||||| || || ||| ||||||| ||| || ||||||| ||||| || ||||| ||||| ||||| ||||| || | |||||||||||| |||||||    
T  29078188 tcgcactcgtcgacaaccatggccacgacatttcttccattagcactgattgtaatgttgtttagacacctgcttttatggttgaaccatccggtggaaa 29078287  T
Q  223 gtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||| || || || ||||| ||||||||    
T  29078288 gtgcaacaacaggagtgtcatctgaatgata 29078318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 29102256 - 29102024
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29102256 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29102157  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| || ||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  29102156 aatcacactcatcaacaactttggccaccacgcttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 29102057  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| || || || ||||| ||||||||    
T  29102056 aagtgcaacaaccggggtgtcatcggaatgata 29102024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 29116401 - 29116193
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29116401 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29116302  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  29116301 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 29116202  T
Q  221 aagtgcaac 229  Q
    |||||||||    
T  29116201 aagtgcaac 29116193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 29098517 - 29098300
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    |||| ||| ||| |||| || |||||||| ||||||||  |||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||| |    
T  29098517 gcttcccatacaaccttggaggcatcaactatgttgttgcgacaaggaggttggtaatcatgatctttatcacatctcattgtagagtcacgctcatcga 29098418  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||| ||||||| ||| | |  ||||| ||||  |||||||| |||||||  | ||||||||   ||||||||||||| ||||     
T  29098417 ctaccatggccaccacacttcttccatttgcattcactgtaatgttgtgaagacatctactcttgttatcgaaccatcagatggaaagtgcaacaactga 29098318  T
Q  236 tgtatcatcagaatgata 253  Q
     ||||| |||||||||||    
T  29098317 agtatcgtcagaatgata 29098300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 29066959 - 29066732
Alignment:
Q  27 acacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcac 126  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| || | ||| |||||||| || ||||||||| ||||||| ||| ||| ||||||||    
T  29066959 acacctaaggctttccacacagccattgaagcatcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcac 29066860  T
Q  127 actcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgc 226  Q
    | |||||||| ||| | || || |||||||  |||||  |||||||||| || ||||  ||||| || |||||    ||||||||||| |||||||||||    
T  29066859 attcatcaactaccattgcaaccacactttgaccatttccacttatggtgatgttgtgaagacaccttctcttagtattgaaccatccagtggaaagtgc 29066760  T
Q  227 aacgactggtgtatcatcagaatgatac 254  Q
     || || || |||||||| |||| ||||    
T  29066759 caccacaggcgtatcatcggaataatac 29066732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 11851821 - 11851587
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11851821 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccatcgt 11851722  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  11851721 agagtcacactcatcaaccacagtggccaccacacttcttccattggcacttatggtaatcttgttgagacatctgctcttgtcgttgaaccatccggtg 11851622  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||||| ||||| || ||||||||||||||    
T  11851621 gaaagtgcaacaactggagtgtcatcagaatgata 11851587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 254
Target Start/End: Complemental strand, 11854518 - 11854300
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||    
T  11854518 gctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaa 11854419  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||||||||||| |||||||||||||| ||||| || || |||||||||| |||||||||||| || || |||||||| || ||    
T  11854418 caaccatggccaccacactttttccattcgcacttatggtaatgttgttgaggcacctgctcttgtggttgaaccatccggttgagagtgcaacaacggg 11854319  T
Q  236 tgtatcatcagaatgatac 254  Q
     || ||||| |||||||||    
T  11854318 agtgtcatcggaatgatac 11854300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 11849875 - 11850107
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  11849875 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 11849974  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  11849975 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 11850074  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| ||||| || ||||||||||||||    
T  11850075 aagtgcaacaactggggtgtcatcagaatgata 11850107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 24241051 - 24241202
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||      ||||||||| ||||||||||| ||||||||||||||||||||      
T  24241051 tgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtt------acaaggaggctggtaatcatgctcttcatcacatcccattgtga 24241144  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 178  Q
    |||||||||||||||| | | ||||||| |||||| | |||||||| || ||||||||    
T  24241145 agtcacactcatcaacaaacatggccaccacacttctaccattggcgctgatggtaat 24241202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 11655015 - 11654929
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcaca 109  Q
    |||||||||||| || ||||| |||||   ||||||||||||||| ||||||| ||||||||||||  ||||||||||  |||||||    
T  11655015 aggcacacccaaagccttccaaacagcagcagaagcatcaacaatattgtttgaacaaggaggttgaaaatcatgttcagcatcaca 11654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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