View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_56 (Length: 223)
Name: NF11885_low_56
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 2250158 - 2250326
Alignment:
| Q |
12 |
agcaaagggaaaacaagataatacaatgtacgttaatgtccggagagagtagacacccataaatatttatccaaccctaaaatctgcaaggttattaatc |
111 |
Q |
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| T |
2250158 |
agcaaagggaaaacaagataatacaatgtacattaatgtccgcagagagtagacacccataaatatttatccaaccctaaaatctgcaaggttattaatc |
2250257 |
T |
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| Q |
112 |
atatacatgcattcatgtttaatttatacatcaaatgcattatttattatacacagatctattatctat |
180 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250258 |
atatacatgcattcatgtttaaattatacatcaaatgcattatttattatacacagatctattatctat |
2250326 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 2250479 - 2250516
Alignment:
| Q |
172 |
attatctatactataccacgtattgcatgtaacatact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2250479 |
attatctatactataccacgtattgcatgtaacatact |
2250516 |
T |
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