View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11885_low_6 (Length: 619)
Name: NF11885_low_6
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Original strand, 40141882 - 40142476
Alignment:
| Q |
18 |
agaagatgtcgagtcaccctgaaaattcattgtactaaataagccaatgaaaagtaaataattacaagagaaataaaatgcataagagcaatgaatttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40141882 |
agaagatgtcgagtcaccctgaaaattcgttgtactaaataagccaatgtaaagtaaataattacaagagaaataaaatgcataagatcaatgaatttgg |
40141981 |
T |
|
| Q |
118 |
attgcatgtagttggaacatgcgatttcatgcagtcataacatcggtggtcattaaatcaatatcgagcagtgcaaaataccaaaattgaaatttggacc |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
40141982 |
atttcatgtagttggaacatgcgatttcatgcagtcataacatcggtggtcattacatcaatattgagcagtgaaaaataccaaaattgaaatttggacc |
40142081 |
T |
|
| Q |
218 |
atccgatcttgatcctgactgcatgactgcgcgagattatgacttcatacaatccaaa---tccaagaacaatattggggagtattcatcaataagaaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142082 |
atccgatcttgatcctgactgcatgactgcgcgagattatgacttcatacaattcaaaaaatccaagaacaatattggggagtattcatcaataagaaca |
40142181 |
T |
|
| Q |
315 |
atggaagtacctcttcagctgatgtctgcctcataaaataaccaaaggaagcagatgattggcgtgcgaaatataccttattgtcacatctcctaagcac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142182 |
atggaagtacctcttcagctgatgtctgcctcataaaataaccaaaggaagcagatgattggcgtgcgaaatataccttattgtcacatctcctaagcac |
40142281 |
T |
|
| Q |
415 |
agagttcagactaccactgcaattctgatggggggaggaaaattgattgatgaacaaaacaatttggaaacagattcatgaaaaataggataacaattgg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142282 |
agagttcagactaccactgcaattctgatagggggaggaaaattgattgatgaacaaaacaatttggaaacagattcatgaaaaataggataacaattgg |
40142381 |
T |
|
| Q |
515 |
ttttggtccctggtttctaataggataattattgctttaggtccttggtttctgaaaaggatcaaattggtttgtctccatactcttgatctctg |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142382 |
ttttggtccctggtttctaataggataattattgctttaggtccttggtttctgaaaaggatcaaattggtttgtctccatactcttgatctctg |
40142476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University