View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11885_low_7 (Length: 603)
Name: NF11885_low_7
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 47709493 - 47709946
Alignment:
| Q |
1 |
taaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctagaacagcagtgtgcaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47709493 |
taaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctagaacagcagtttgcaagg |
47709592 |
T |
|
| Q |
101 |
ctgttgtgttggatggatccacagtcattgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaaagtctaataata---c |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47709593 |
ctgttgtgttggatggatc-------attgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaaagtctaataataatac |
47709685 |
T |
|
| Q |
198 |
atcaatagcagtcaatgtctttgaacaaattaacaatgaagaaaaattccttttacatgtttatttttgccctcaatcctaaacatnnnnnnntgagttt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47709686 |
atcaatagcagtcaatgtctttgaacaa--------tgaagaaaaattccttttacatgtttatttttgccctcaatcctaaacataaaaaa-tgagttt |
47709776 |
T |
|
| Q |
298 |
atacatactttcaactccaaatctatccctagcttacttttataatcaacatgttggaacttaaaaaagccatggtaaaatgagtttatagtgagttcca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709777 |
atacatactttcaactccaaatctatccctagctaacttttataatcaacattttggaacttaaaaaagccatggtaaaatgagtttatagtgagttcca |
47709876 |
T |
|
| Q |
398 |
agctgatgccaaccttgactgaagtgaaatatactttattttttctcttctccacactaacctcaaactc |
467 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709877 |
agctgatgccaaccttgagtgaagtgaaatatactttattttttctcttctccacactaacctcaaactc |
47709946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 468 - 586
Target Start/End: Original strand, 47709981 - 47710099
Alignment:
| Q |
468 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
47709981 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacatagggtaatata |
47710080 |
T |
|
| Q |
568 |
agatcagatcactcacaat |
586 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47710081 |
agatcagatcactcacaat |
47710099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 23033286 - 23033342
Alignment:
| Q |
86 |
cagcagtgtgcaaggctgttgtgttggatggatccacagtcattgacaattcagaat |
142 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033286 |
cagctgtgtgtaaggcggtggtgttggatggatccacagtcattgacaattcagaat |
23033342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 468 - 586
Target Start/End: Original strand, 39492447 - 39492565
Alignment:
| Q |
468 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39492447 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacagggtaatata |
39492546 |
T |
|
| Q |
568 |
agatcagatcactcacaat |
586 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39492547 |
agatcagatcactcacaat |
39492565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 468 - 586
Target Start/End: Complemental strand, 35839813 - 35839695
Alignment:
| Q |
468 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacaaggtaatata |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35839813 |
catgattttggattacattcttggcaacttcaattttgtttacatttgattgataacaaaggttaaaacacaaccagaccaaacaacacagggtaatata |
35839714 |
T |
|
| Q |
568 |
agatcagatcactcacaat |
586 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35839713 |
agatcagatcactcacaat |
35839695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 41066265 - 41066310
Alignment:
| Q |
94 |
tgcaaggctgttgtgttggatggatccacagtcattgacaattcag |
139 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
41066265 |
tgcaaagctgttgtgtttgatggatccactgtcattgacaattcag |
41066310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 18185010 - 18184970
Alignment:
| Q |
165 |
aagaaaatagcataccagaaagtctaataatacatcaatag |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
18185010 |
aagaaaatagcataccagaaagtctgataatatatcaatag |
18184970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University