View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_9 (Length: 560)
Name: NF11885_low_9
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 37208901 - 37209446
Alignment:
| Q |
1 |
atgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaacaacctgtgc |
100 |
Q |
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| T |
37208901 |
atgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaacaacctgtgc |
37209000 |
T |
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| Q |
101 |
atgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttgagagtgataa |
200 |
Q |
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| T |
37209001 |
atgtgttttgggatgtatatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttgagagtgataa |
37209100 |
T |
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| Q |
201 |
agaagagaaaggtttagaaggtgagagtgatgatggtagtgctactagtggatattattcaacaaaaagttatactccttttgagtcttgccttgtactc |
300 |
Q |
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| T |
37209101 |
agaagagaaaggtttagaaggtgagagtgatgatggtagtgctactagtggatattattcaacaaaaagttatactccttttgagtcttgccttgtactc |
37209200 |
T |
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| Q |
301 |
tgtgcctataaacttgagtgataagttataagtcagagagaagagaccaaatgtttatatgatagtcggggcaaccatgcttttaaattgcggttgcggc |
400 |
Q |
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| T |
37209201 |
tgtgcctataaacttgagtgataagttataagtcagagagaagagaccaaatgtttatatgatagtcggggcaaccatgcttttaaattgcggttgcggc |
37209300 |
T |
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| Q |
401 |
tatgttgtcaatcattatattgcgagaaaatgttgg-aaatgcagcctttgcagtcaaaattgaagttgcaatgccattacgaggatctcaaattcattt |
499 |
Q |
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| T |
37209301 |
tatgttgtcaatcattatattgcgagaaaatgttggaaaatgcagcctttgcagtcaaaattgaagttgcaatgccattacgaggatctcaaattcattt |
37209400 |
T |
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| Q |
500 |
atactgcagggcacaatttaaaactatggtggcaactagtagagac |
545 |
Q |
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| T |
37209401 |
atactgcagggcacaatttaaaactatggtggcaactagtagagac |
37209446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 29503823 - 29504001
Alignment:
| Q |
1 |
atgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaacaacctgtgc |
100 |
Q |
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||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29503823 |
atgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaaatttagagggaatcaaactgttatggttaataaacaacctgtgc |
29503922 |
T |
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| Q |
101 |
atgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcc |
179 |
Q |
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| T |
29503923 |
aagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcc |
29504001 |
T |
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