View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11886_low_2 (Length: 522)
Name: NF11886_low_2
Description: NF11886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11886_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 50393963 - 50393460
Alignment:
| Q |
18 |
ccacaaatagtatcaacatgtctatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggactgaacacatcttcccaccattttgg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50393963 |
ccacaaatagtatcaacatgtccatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggattgaacacatcttcccaccattttgg |
50393864 |
T |
|
| Q |
118 |
atcnnnnnnnggagctgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatctacc |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50393863 |
atctttttttggagctgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatctacc |
50393764 |
T |
|
| Q |
218 |
aaagcatgttttttactctgccaaatcttgttctcttcaatgaaaacaacaacaagtggaagaaaaagcaagaaaacaacgacagcagcacttaaaccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393763 |
aaagcatgttttttactctgccaaatcttgttctcttcaatgaaaacaacaacaagtggaagaaaaagcaagaaaacaacgacagcagcacttaaaccaa |
50393664 |
T |
|
| Q |
318 |
actcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacatacaagaaattataaaaaacctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50393663 |
actcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacatacaagaaattataaaaaacctt |
50393564 |
T |
|
| Q |
418 |
aagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50393563 |
aagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcc |
50393464 |
T |
|
| Q |
518 |
tttg |
521 |
Q |
| |
|
|||| |
|
|
| T |
50393463 |
tttg |
50393460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 50385544 - 50385041
Alignment:
| Q |
18 |
ccacaaatagtatcaacatgtctatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggactgaacacatcttcccaccattttgg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
50385544 |
ccacaaatagtatcaacatgtccatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggattgaacacatcttcccaccattttgg |
50385445 |
T |
|
| Q |
118 |
atcnnnnnnnggagctgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatctacc |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
50385444 |
atctttttttggagctgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatcaacc |
50385345 |
T |
|
| Q |
218 |
aaagcatgttttttactctgccaaatcttgttctcttcaatgaaaacaacaacaagtggaagaaaaagcaagaaaacaacgacagcagcacttaaaccaa |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
50385344 |
aaagcaagttttttactctgccaaatcttgttctcttcaatgaaaacaacggcaagtggtagaaaaagcaagaaaataacgacagcagcacttaaaccat |
50385245 |
T |
|
| Q |
318 |
actcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacatacaagaaattataaaaaacctt |
417 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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|
| T |
50385244 |
actcactctgtgaaaaactaaccttcttctgaattatgatcataaccaacaagaatccagcaagaccaagtgagatatacaagaaattataaaaaacctt |
50385145 |
T |
|
| Q |
418 |
aagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50385144 |
aagctcattaacttgtcgaacaggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcc |
50385045 |
T |
|
| Q |
518 |
tttg |
521 |
Q |
| |
|
|||| |
|
|
| T |
50385044 |
tttg |
50385041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 50390689 - 50390186
Alignment:
| Q |
18 |
ccacaaatagtatcaacatgtctatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggactgaacacatcttcccaccattttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50390689 |
ccacaaatagtatcaacatgtctatgctgaaaagtgcttgaagtatcgtataatcctcacctcttgctggtggattgaacacatcttcccaccattttgg |
50390590 |
T |
|
| Q |
118 |
atcnnnnnnnggagctgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatctacc |
217 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50390589 |
atctttttttgggactgaaactgaaacagcagagttgaccttttctgtttcagttactgtttcaccttctgttactattttcactggtgaaggatcaacc |
50390490 |
T |
|
| Q |
218 |
aaagcatgttttttactctgccaaatcttgttctcttcaatgaaaacaacaacaagtggaagaaaaagcaagaaaacaacgacagcagcacttaaaccaa |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| || ||||||||||||||||| | |
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|
| T |
50390489 |
aaagcaagttttttactctgccaaatcttgttctcttcaataaaaacaacagcaagtgggagaaaaagcaagaaaatcaccacagcagcacttaaaccga |
50390390 |
T |
|
| Q |
318 |
actcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacatacaagaaattataaaaaacctt |
417 |
Q |
| |
|
|| ||||||||||||||||||| |||||| || ||||| |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
50390389 |
acccaccctgtgtgaaactactactcttctctataataattataaccaacaagaaaccagcaagagcaagtgagatgtacaagaaattataaaaaacctt |
50390290 |
T |
|
| Q |
418 |
aagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcc |
517 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| || |||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
50390289 |
aagctcattgacttgtcgaacaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcc |
50390190 |
T |
|
| Q |
518 |
tttg |
521 |
Q |
| |
|
|||| |
|
|
| T |
50390189 |
tttg |
50390186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 50407154 - 50407073
Alignment:
| Q |
440 |
ggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttg |
521 |
Q |
| |
|
|||||||| || ||||| |||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||| |
|
|
| T |
50407154 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttg |
50407073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 521
Target Start/End: Complemental strand, 24224047 - 24223979
Alignment:
| Q |
454 |
aatggttcgaagaaaagcaaaagaaatagcagca-ggaagccaacctataaacaaaatcaaagcctttg |
521 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | |||||| | ||| ||||||||||||||||||| |
|
|
| T |
24224047 |
aatggttcgaagaaaaacaaaagaaatagcaacatgtaagccagcttatgaacaaaatcaaagcctttg |
24223979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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