View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11886_low_4 (Length: 447)
Name: NF11886_low_4
Description: NF11886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11886_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 26 - 429
Target Start/End: Complemental strand, 13130092 - 13129689
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || | ||||| |||||| || |||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
13130092 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac |
13129993 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
||||||||||| | |||||||||||||||| | || ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13129992 |
tacctagtggataccatgttagtccaaatacaactttgatttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13129893 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129892 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
13129793 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129792 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctg |
13129693 |
T |
|
| Q |
426 |
tgct |
429 |
Q |
| |
|
|||| |
|
|
| T |
13129692 |
tgct |
13129689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 30368029 - 30368424
Alignment:
| Q |
19 |
ggaaaaccttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatct |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30368029 |
ggaaagccttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatcagtgcaatcaaatct |
30368128 |
T |
|
| Q |
119 |
gatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30368129 |
gatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaaaaaatatggggagaagattgca |
30368228 |
T |
|
| Q |
219 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
318 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| |
|
|
| T |
30368229 |
tggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtat |
30368328 |
T |
|
| Q |
319 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30368329 |
gggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc |
30368424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 26 - 427
Target Start/End: Complemental strand, 13094663 - 13094262
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || | ||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
13094663 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatac |
13094564 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
||||||||||| | |||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13094563 |
tacctagtggataccatgttactccaaatacaactttaatttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13094464 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094463 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaa |
13094364 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctg |
425 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094363 |
gatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctg |
13094264 |
T |
|
| Q |
426 |
tg |
427 |
Q |
| |
|
|| |
|
|
| T |
13094263 |
tg |
13094262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 427
Target Start/End: Complemental strand, 13161785 - 13161384
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || | ||||| ||||| || |||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
13161785 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatac |
13161686 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
||||||||||||| | ||||||||||||| | ||||| |||||| ||||| ||||||| ||||||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
13161685 |
tacctagtggagaacgtattagtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
13161586 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161585 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaa |
13161486 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13161485 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaaggctttctg |
13161386 |
T |
|
| Q |
426 |
tg |
427 |
Q |
| |
|
|| |
|
|
| T |
13161385 |
tg |
13161384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 423
Target Start/End: Original strand, 13070104 - 13070501
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||| || |||| || |||||| ||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
13070104 |
cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac |
13070203 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||| | ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13070204 |
tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13070303 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| | ||||||||||| ||||||||||||||| |||||||||| ||||| || |||| |||| | |||||| |
|
|
| T |
13070304 |
taagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaa |
13070403 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13070404 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttc |
13070501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 26 - 416
Target Start/End: Complemental strand, 13204723 - 13204333
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| || |||| || |||||| ||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
13204723 |
cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac |
13204624 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||| | ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13204623 |
tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13204524 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||| | |||||| |
|
|
| T |
13204523 |
taagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaa |
13204424 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
13204423 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaa |
13204333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 26 - 424
Target Start/End: Complemental strand, 13101264 - 13100867
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||| ||| || |||||||||| ||||||| |
|
|
| T |
13101264 |
cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatac |
13101165 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
| |||||||||||| | ||||||||||||| | |||| | ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13101164 |
ttcctagtggagagcgttttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13101065 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||| | || ||||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
13101064 |
taagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa-tcaggacctagaagttgtatgggtaag |
13100966 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttct |
424 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
13100965 |
gatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttct |
13100867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 424
Target Start/End: Complemental strand, 13007464 - 13007066
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||| |||| |||||||||| || ||||||| |
|
|
| T |
13007464 |
cttgataagctagtgtacctccatggagctctatgtgaagccatgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatac |
13007365 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||| | ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13007364 |
tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
13007265 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
|||||||||||||||| | || ||||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||||| || || |
|
|
| T |
13007264 |
taagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaag |
13007165 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttct |
424 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||| ||||||| | ||||||| |
|
|
| T |
13007164 |
gatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttct |
13007066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 27 - 411
Target Start/End: Original strand, 13244450 - 13244834
Alignment:
| Q |
27 |
ttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatact |
126 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||||||||| || ||||||| |||||| || | | ||| ||| | | || ||||||||||||||||| |
|
|
| T |
13244450 |
ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact |
13244549 |
T |
|
| Q |
127 |
acctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaattt |
226 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| || || ||||||||||| |||||||||||| || ||||||||||||| |||||| |||||||| |
|
|
| T |
13244550 |
acctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgcaacaaatatggggagatgattgcttggaattt |
13244649 |
T |
|
| Q |
227 |
aagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaag |
326 |
Q |
| |
|
|||||||| ||||||||||| | || |||| |||||| ||||||| |||||||||||| |||||||||| |||| || |||| |||||| || |||| |
|
|
| T |
13244650 |
aagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaag |
13244749 |
T |
|
| Q |
327 |
atcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac |
411 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13244750 |
atcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac |
13244834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 19279096 - 19279473
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||| || | ||||| ||||| ||||||| ||||| | | ||||| | || || ||||||| |
|
|
| T |
19279096 |
cttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatatac |
19279195 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| || |||||| | ||||| |
|
|
| T |
19279196 |
tacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggatggaacaaatatggggtgatgattgcctagaatt |
19279295 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
| |||||||||||||||||| || || ||| | ||||||||||||||||| ||||||||| |||| || || |||| || |||| ||| | || ||| |
|
|
| T |
19279296 |
tcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaa |
19279395 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
403 |
Q |
| |
|
||| ||| |||| |||||||||| ||||| ||||||||| | ||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
19279396 |
gatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac |
19279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 12963803 - 12964180
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||| | | ||||| |||||| || |||| ||||| | | ||||||| ||||| |||||| |
|
|
| T |
12963803 |
cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat |
12963902 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| || || ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
12963903 |
tacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatt |
12964002 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
||||||||| ||||||||||| | || ||||| |||||||| || |||||||| |||||| |||| ||||| |||| || |||| |||||| || ||| |
|
|
| T |
12964003 |
taagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaa |
12964102 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
403 |
Q |
| |
|
||| |||| || |||||||||| ||||| || ||| | |||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
12964103 |
gatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac |
12964180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 13080793 - 13081170
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| || | ||||| |||||| ||||| | ||| ||| | |||| |||||||| |||| || |
|
|
| T |
13080793 |
cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcggataaac |
13080892 |
T |
|
| Q |
126 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatt |
225 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||| |||||| |||| || |
|
|
| T |
13080893 |
ttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatggggagaggattgcttggagtt |
13080992 |
T |
|
| Q |
226 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaa |
325 |
Q |
| |
|
||||||||||||||||||||| || || ||| | |||||||| || || ||||| |||||| |||| || || |||| || |||| ||| | || ||| |
|
|
| T |
13080993 |
taagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaa |
13081092 |
T |
|
| Q |
326 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
403 |
Q |
| |
|
||| ||||||| |||||||||| ||||| |||||||| | ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
13081093 |
gatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac |
13081170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 13086377 - 13085980
Alignment:
| Q |
20 |
gaaaaccttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctg |
119 |
Q |
| |
|
||||| ||| |||| ||||| ||||| |||||||||||||||||| | ||||||| |||||| ||||||| ||| ||| | ||||||||||| ||| |
|
|
| T |
13086377 |
gaaaagcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctg |
13086278 |
T |
|
| Q |
120 |
atatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcat |
219 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||| |||||||||||| || |||||||||| | ||| || | |
|
|
| T |
13086277 |
atatactacctagtggagattatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaacaaatatggggtaaggatcgctt |
13086178 |
T |
|
| Q |
220 |
ggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtata |
319 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||| ||||| | ||||||||||||| ||||||| |||| || || |||| || ||| |||| | |
|
|
| T |
13086177 |
cgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtctt |
13086078 |
T |
|
| Q |
320 |
ggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
417 |
Q |
| |
|
|| |||||| |||| | |||||||||| ||||| ||||||||| ||||| ||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
13086077 |
gggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaag |
13085980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 13271856 - 13271474
Alignment:
| Q |
20 |
gaaaaccttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctg |
119 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| ||||||||||||| || |||| || |||||| || |||| ||||| | | ||||| | || |||| |
|
|
| T |
13271856 |
gaaaacattgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctg |
13271757 |
T |
|
| Q |
120 |
atatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgcat |
219 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| || |||||||| |||||||||||||| |||||||| |||||| | ||||||| | |||||| | |
|
|
| T |
13271756 |
atatactacctagtggacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaacatgtatggggtggtgattgctt |
13271657 |
T |
|
| Q |
220 |
ggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtata |
319 |
Q |
| |
|
||| ||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||| |||| ||||| |||| || |||| ||| | |
|
|
| T |
13271656 |
ggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtctt |
13271557 |
T |
|
| Q |
320 |
ggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtca |
402 |
Q |
| |
|
|| |||||| |||| || ||||||||||| ||||| |||||| || | ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
13271556 |
gggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca |
13271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 13065134 - 13065539
Alignment:
| Q |
19 |
ggaaaaccttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatct |
118 |
Q |
| |
|
|||||| |||||||| ||| | |||||||| ||||||||||||||| || | ||||| |||||| |||||||| | |||| | |||||||||| || |
|
|
| T |
13065134 |
ggaaaagcttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagct |
13065233 |
T |
|
| Q |
119 |
gatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaagaaatatggggagaagattgca |
218 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||| | | || | |||| ||||||| | |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
13065234 |
gatatacttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaagactgca |
13065333 |
T |
|
| Q |
219 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||| | |||||||||||||| |||||||||||| |||||||||| |||| || |||| |||| | |
|
|
| T |
13065334 |
tggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgttt |
13065433 |
T |
|
| Q |
319 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaagg |
418 |
Q |
| |
|
||||||||| | | ||| || |||||||||||| || || ||| | || ||||||| |||||| | ||||| ||||| |||||||| |||||| |
|
|
| T |
13065434 |
gggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaagg |
13065533 |
T |
|
| Q |
419 |
ctttct |
424 |
Q |
| |
|
|||||| |
|
|
| T |
13065534 |
ctttct |
13065539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 402
Target Start/End: Complemental strand, 13010739 - 13010661
Alignment:
| Q |
324 |
aagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtca |
402 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||||| |
|
|
| T |
13010739 |
aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca |
13010661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 19727417 - 19727316
Alignment:
| Q |
26 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggctgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
125 |
Q |
| |
|
|||||||||||||| |||||||| |||| | ||||| || || |||| || |||||| ||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
19727417 |
cttgataagctagtgtacctccacggagatctatgttaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatctcatatac |
19727318 |
T |
|
| Q |
126 |
ta |
127 |
Q |
| |
|
|| |
|
|
| T |
19727317 |
ta |
19727316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
| Q |
280 |
caagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatg |
352 |
Q |
| |
|
||||||| || ||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg |
31380325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 377566 - 377624
Alignment:
| Q |
194 |
gaagaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagag |
252 |
Q |
| |
|
||||| |||||||||||||||||| |||| || ||||| |||||||||||||||||||| |
|
|
| T |
377566 |
gaagagatatggggagaagattgcttggagttcaagccagagagatggatatctgagag |
377624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 346936 - 346845
Alignment:
| Q |
194 |
gaagaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagtt |
285 |
Q |
| |
|
||||| ||||||||| ||||||| |||| || ||||| |||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
346936 |
gaagagatatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt |
346845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 355595 - 355504
Alignment:
| Q |
194 |
gaagaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagtt |
285 |
Q |
| |
|
||||| ||||||||| ||||||| |||| || ||||| |||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
355595 |
gaagagatatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt |
355504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 341826 - 341913
Alignment:
| Q |
170 |
tctttgtatgctatgggaaggatggaagaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggag |
257 |
Q |
| |
|
||||||||||| ||||||||| ||| | || |||||| |||||||| |||| |||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
341826 |
tctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggag |
341913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 36668230 - 36668118
Alignment:
| Q |
185 |
ggaaggatggaagaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagt |
284 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||||||| || ||||| ||| | ||| ||| |||| | || |||||||| |||||||||| |
|
|
| T |
36668230 |
ggaagggtggaggaaatatggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagt |
36668131 |
T |
|
| Q |
285 |
tcgtagctttcaa |
297 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
36668130 |
tcattgctttcaa |
36668118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 12164366 - 12164320
Alignment:
| Q |
197 |
gaaatatggggagaagattgcatggaatttaagcctgagagatggat |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
12164366 |
gaaatatggggagaagattgcttggaatttaagccagagaggtggat |
12164320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 12175891 - 12175791
Alignment:
| Q |
197 |
gaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttca |
296 |
Q |
| |
|
|||||||||||||||||||| || ||||||| || ||||| ||||| ||| ||| |||| || || ||||| || |||||||||||| | ||||||| |
|
|
| T |
12175891 |
gaaatatggggagaagattgtttgaaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttca |
12175792 |
T |
|
| Q |
297 |
a |
297 |
Q |
| |
|
| |
|
|
| T |
12175791 |
a |
12175791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 3321646 - 3321734
Alignment:
| Q |
197 |
gaaatatggggagaagattgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagtt |
285 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| || ||||| ||||| ||| ||| ||||| || || |||||||| ||||||||||| |
|
|
| T |
3321646 |
gaaatttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtt |
3321734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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