View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11886_low_6 (Length: 359)
Name: NF11886_low_6
Description: NF11886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11886_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 36305569 - 36305899
Alignment:
| Q |
7 |
caacccaatgtgcacaagttagtttcattctttctcctgttgcatcatctatgatccatctcttttgagttgagagtggaaatgagttgcaacagtatga |
106 |
Q |
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| T |
36305569 |
caacccaatgtgcacaagttagtttcattctttctcctgttgcatcatctatgatccatctcttttgagttgagagtggaaatgagttgcaacagtatga |
36305668 |
T |
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| Q |
107 |
ggttagtatggctatgaaaatggttgaaactaataaaagggatgatttgctcattttgtagtttttactcgtagcttactctacctttcaatgaatgtgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36305669 |
ggttagtatggctatgaaaatggttgaaactaataaaagggatgatttgctcattttgtagtttttactcgtagcttactctacctttcaatgaatgtgt |
36305768 |
T |
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| Q |
207 |
catttactctcttctagtgtgtttatatagtcattttgttttttggataaatctaaaaagctagacgataaagtgatatacataaattttaatctttatc |
306 |
Q |
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|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36305769 |
catttactctcttctagtgtgtttatatagtc--tgttttttttggataaatctaaaaaactagacgataaagtgatatacataaattttaatctttatc |
36305866 |
T |
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| Q |
307 |
catttttaaatttaagtttacccaaatgtaagg |
339 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
36305867 |
catttttaaatttaagtttactcaaatgtaagg |
36305899 |
T |
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