View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11887_high_13 (Length: 384)
Name: NF11887_high_13
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_high_13 |
 |  |
|
| [»] scaffold0341 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 47713655 - 47713298
Alignment:
| Q |
19 |
cttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713655 |
cttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgta |
47713556 |
T |
 |
| Q |
119 |
tctcaagcccagggccaaccagattttgtgcgctactcttgtttaaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713555 |
tctcaagcccagggccaaccagattttgtgcgctactcttgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccc |
47713456 |
T |
 |
| Q |
219 |
ttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713455 |
ttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcag |
47713356 |
T |
 |
| Q |
319 |
aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713355 |
aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
47713298 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 47746238 - 47745881
Alignment:
| Q |
19 |
cttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47746238 |
cttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagctattattttccctttactcttttctcctttttattatcattatcgta |
47746139 |
T |
 |
| Q |
119 |
tctcaagcccagggccaaccagattttgtgcgctactcttgtttaaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccc |
218 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47746138 |
tctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccc |
47746039 |
T |
 |
| Q |
219 |
ttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
47746038 |
ttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcag |
47745939 |
T |
 |
| Q |
319 |
aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
376 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
47745938 |
aggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttcttctc |
47745881 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 47718446 - 47718092
Alignment:
| Q |
19 |
cttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
47718446 |
cttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagctattattttccttttattctgttct---ttttattatcattatcgta |
47718350 |
T |
 |
| Q |
119 |
tctcaagcccagggccaaccagattttgtgcgctactcttgtttaaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccc |
218 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47718349 |
tctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcagcaccc |
47718250 |
T |
 |
| Q |
219 |
ttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcag |
318 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
47718249 |
ttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcag |
47718150 |
T |
 |
| Q |
319 |
aggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
376 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
47718149 |
aggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttcttctc |
47718092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 376
Target Start/End: Complemental strand, 47760561 - 47760213
Alignment:
| Q |
23 |
ttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgtatctc |
122 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| ||||||||||| ||||| ||||| || ||||||| ||||||||| || | |||| || ||||||| |
|
|
| T |
47760561 |
ttccaagacagagagcaatat--cagcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattactttt---gtatctc |
47760467 |
T |
 |
| Q |
123 |
aagcccagggccaaccagattttgtgcgctactcttgtttaaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccctttt |
222 |
Q |
| |
|
||||| | | |||||| |||||| || | ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47760466 |
aagccaaagcccaacctgattttctgtacaacttttgtaaaaacgataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccgtttt |
47760367 |
T |
 |
| Q |
223 |
atccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagagga |
322 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
47760366 |
gtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagagga |
47760267 |
T |
 |
| Q |
323 |
gatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
376 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
47760266 |
gatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctc |
47760213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 176 - 333
Target Start/End: Complemental strand, 6513114 - 6512957
Alignment:
| Q |
176 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
275 |
Q |
| |
|
||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| |||||||||||||| | ||||||||||| ||||| |||| ||||| |
|
|
| T |
6513114 |
aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt |
6513015 |
T |
 |
| Q |
276 |
atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc |
333 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
6513014 |
atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc |
6512957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 338
Target Start/End: Complemental strand, 6507218 - 6507051
Alignment:
| Q |
171 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
270 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
6507218 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
6507119 |
T |
 |
| Q |
271 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
338 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
6507118 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
6507051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 325
Target Start/End: Complemental strand, 6517511 - 6517364
Alignment:
| Q |
178 |
ctacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttat |
277 |
Q |
| |
|
||||||| |||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||| || | ||||||| |
|
|
| T |
6517511 |
ctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcctcttat |
6517412 |
T |
 |
| Q |
278 |
ggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat |
325 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6517411 |
ggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat |
6517364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 6521552 - 6521678
Alignment:
| Q |
206 |
aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca |
305 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| | ||||||||||| ||||| |||| ||||||||| | ||||| |||||||||||||| | |
|
|
| T |
6521552 |
aaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcga |
6521651 |
T |
 |
| Q |
306 |
ttggactctgcagaggagatgttaaac |
332 |
Q |
| |
|
||||||| || ||||||||||| |||| |
|
|
| T |
6521652 |
ttggactatgtagaggagatgtcaaac |
6521678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 6500384 - 6500263
Alignment:
| Q |
176 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
275 |
Q |
| |
|
||||||||| | |||||||||||| | || ||||||||||| |||||||| | ||||||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
6500384 |
aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac |
6500285 |
T |
 |
| Q |
276 |
atggccaaaacaccgacaaagt |
297 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
6500284 |
atggcgaaaacagcgacaaagt |
6500263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 6523572 - 6523678
Alignment:
| Q |
224 |
tccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag |
323 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||||||||| | || ||||||| ||||||||||||| ||||| || |||||||| | |
|
|
| T |
6523572 |
tccactctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg |
6523671 |
T |
 |
| Q |
324 |
atgttaa |
330 |
Q |
| |
|
||||||| |
|
|
| T |
6523672 |
atgttaa |
6523678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 47777840 - 47777937
Alignment:
| Q |
176 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctc |
273 |
Q |
| |
|
||||||||| | || |||||||| ||| ||||||||||| |||||||||| ||||| ||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
47777840 |
aactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttctc |
47777937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 47772876 - 47772983
Alignment:
| Q |
173 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttct |
272 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| || || ||||| |||| ||| |||| | || ||||||||||||| ||||||||||||| |
|
|
| T |
47772876 |
ggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
47772975 |
T |
 |
| Q |
273 |
cttatggc |
280 |
Q |
| |
|
| |||||| |
|
|
| T |
47772976 |
catatggc |
47772983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 338
Target Start/End: Complemental strand, 1243 - 1076
Alignment:
| Q |
171 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
270 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
1243 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
1144 |
T |
 |
| Q |
271 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
338 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
1143 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
1076 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 338
Target Start/End: Complemental strand, 8897 - 8730
Alignment:
| Q |
171 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
270 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
8897 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
8798 |
T |
 |
| Q |
271 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
338 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
8797 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
8730 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 375
Target Start/End: Complemental strand, 28862032 - 28861825
Alignment:
| Q |
168 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
267 |
Q |
| |
|
||||||||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28862032 |
ataatggcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28861933 |
T |
 |
| Q |
268 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
367 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28861932 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28861833 |
T |
 |
| Q |
368 |
gttcttct |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
28861832 |
gttcttct |
28861825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 168 - 375
Target Start/End: Complemental strand, 28856755 - 28856548
Alignment:
| Q |
168 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
267 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28856755 |
ataatagcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28856656 |
T |
 |
| Q |
268 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
367 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28856655 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28856556 |
T |
 |
| Q |
368 |
gttcttct |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
28856555 |
gttcttct |
28856548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 375
Target Start/End: Complemental strand, 28831536 - 28831352
Alignment:
| Q |
191 |
agcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccg |
290 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| ||||| || ||| || || | |
|
|
| T |
28831536 |
agcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaaca |
28831437 |
T |
 |
| Q |
291 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttct |
375 |
Q |
| |
|
|||||||| ||||||| ||| | || |||||||||||||| || ||| ||||||| || ||| || |||||||||||||||| |
|
|
| T |
28831436 |
acaaagtatacgccataggattatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttct |
28831352 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 27371881 - 27371748
Alignment:
| Q |
176 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
275 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||| || |||||| ||| || | || ||||| |||| |||| |||||||| || ||||||||||| | |
|
|
| T |
27371881 |
aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat |
27371782 |
T |
 |
| Q |
276 |
atggccaaaacaccgacaaagtaaacgccattgg |
309 |
Q |
| |
|
|||||||| || | |||||| |||| |||||||| |
|
|
| T |
27371781 |
atggccaacacccagacaaaataaaggccattgg |
27371748 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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