View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11887_high_16 (Length: 349)

Name: NF11887_high_16
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11887_high_16
NF11887_high_16
[»] scaffold0196 (1 HSPs)
scaffold0196 (41-243)||(30767-30967)
[»] chr8 (4 HSPs)
chr8 (36-251)||(16343413-16343628)
chr8 (261-307)||(5849597-5849643)
chr8 (271-307)||(23754738-23754774)
chr8 (264-296)||(44712424-44712456)
[»] chr6 (1 HSPs)
chr6 (130-266)||(11210572-11210709)
[»] chr3 (2 HSPs)
chr3 (41-210)||(49285961-49286129)
chr3 (261-294)||(36671058-36671091)
[»] chr4 (3 HSPs)
chr4 (140-186)||(24010830-24010875)
chr4 (261-294)||(19473988-19474021)
chr4 (262-294)||(36177901-36177933)
[»] chr5 (5 HSPs)
chr5 (271-307)||(13332336-13332372)
chr5 (262-307)||(17097833-17097878)
chr5 (266-307)||(24468317-24468358)
chr5 (39-135)||(12042505-12042601)
chr5 (262-294)||(33037515-33037547)
[»] chr7 (2 HSPs)
chr7 (264-294)||(22623385-22623415)
chr7 (266-310)||(41750114-41750158)
[»] chr1 (3 HSPs)
chr1 (258-308)||(8577532-8577582)
chr1 (265-294)||(43775204-43775233)
chr1 (261-294)||(45121537-45121570)


Alignment Details
Target: scaffold0196 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 30767 - 30967
Alignment:
Q  41 taatatgcacttcttgattactcacatttttagagagggcaactattatgctgataagctagccactttaggtttaagtgtgatcaattttacttagtag 140  Q
    ||||||||||||| ||||||||||||| |||||||| || ||| ||| |||||||||||| || | ||||||| |||||||| | ||||| |||| || |    
T  30767 taatatgcacttcatgattactcacatctttagagaaggtaaccattgtgctgataagcttgcgaatttaggtctaagtgtggtaaatttcacttggtgg 30866  T
Q  141 aattttgctcctgcagaaattttgggggacttagctagaaataggttaggtcttcctaatttcagattttgttaatgtttttgagggtcaggtttggccc 240  Q
    ||||   |||||||||| ||| | |  |||||| |||||||||| |||||||||||| |||||||||||||||||  ||| |||||||||||||||||||    
T  30867 aattaccctcctgcagagattctagaagacttatctagaaatagattaggtcttccttatttcagattttgttaa--tttctgagggtcaggtttggccc 30964  T
Q  241 ccc 243  Q
    |||    
T  30965 ccc 30967  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 16343628 - 16343413
Alignment:
Q  36 attagtaatatgcacttcttgattactcacatttttagagagggcaactattatgctgataagctagccactttaggtttaagtgtgatcaattttactt 135  Q
    ||||||| |||||||||| |||| |||||||| |||||||| || ||  | | ||| |||||||||||||   |||||||||  |||||||||||| |||    
T  16343628 attagtagtatgcacttcatgatcactcacatctttagagaaggaaaacactgtgcagataagctagccaacctaggtttaacggtgatcaattttgctt 16343529  T
Q  136 agtagaattttgctcctgcagaaattttgggggacttagctagaaataggttaggtcttcctaatttcagattttgttaatgtttttgagggtcaggttt 235  Q
     || | | | |||| ||| |||||||||||  |||||  |||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  16343528 ggtgggactatgcttctgtagaaattttggcagacttgactagtaataggttaggtcttcctaatttcagattttgctaatg-ttttgagggttaggttt 16343430  T
Q  236 gg-cccccctctttgta 251  Q
    || ||||||||||||||    
T  16343429 ggccccccctctttgta 16343413  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 5849643 - 5849597
Alignment:
Q  261 tttttagaggaatgatatttgaacaaccatttttaaatagcttttgt 307  Q
    ||||||||| ||||||||||||||||||||||||  ||| |||||||    
T  5849643 tttttagagaaatgatatttgaacaaccattttttgataacttttgt 5849597  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 23754774 - 23754738
Alignment:
Q  271 aatgatatttgaacaaccatttttaaatagcttttgt 307  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23754774 aatgatatttgaacaaccattttttaataacttttgt 23754738  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 44712424 - 44712456
Alignment:
Q  264 ttagaggaatgatatttgaacaaccatttttaa 296  Q
    |||||| ||||||||||||||||||||||||||    
T  44712424 ttagagcaatgatatttgaacaaccatttttaa 44712456  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 11210709 - 11210572
Alignment:
Q  130 ttacttagtagaattttgctcctgcagaaattttgggggact--tagctagaaataggttaggtcttcctaatttcagattttgttaatgtttttgaggg 227  Q
    |||||| || |||||||||||||||||||||||||    | |  | | |||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  11210709 ttacttggtggaattttgctcctgcagaaattttgctccattacttggtagaaataggttaggtcttcctaatttcagattttgctaatgttcttgagga 11210610  T
Q  228 tcaggtttggcccccctctttgtatctattttcttttta 266  Q
    | |||||| | |||||||||||||||| |||||||||||    
T  11210609 ttaggttt-gaccccctctttgtatcttttttcttttta 11210572  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 49286129 - 49285961
Alignment:
Q  41 taatatgcacttcttgattactcacatttttagagagggcaactattatgctgataagctagccactttaggtttaagtgtgatcaattttacttagtag 140  Q
    ||||||||||||| ||||||||||||| |||||||| || ||  ||| || ||||||||| |  | ||||||| |||||||| | ||||| |||| || |    
T  49286129 taatatgcacttcatgattactcacatctttagagaaggtaatcattgtgttgataagcttgtaaatttaggtctaagtgtggtaaatttcacttggtgg 49286030  T
Q  141 aattttgctcctgcagaaattttgggggacttagctagaaataggttaggtcttcctaatttcagatttt 210  Q
    ||||   |||||||||| ||| | || |||||| ||| |||||| |||||||||||| ||||||||||||    
T  49286029 aattaccctcctgcagagattctaggagactta-ctaaaaatagattaggtcttccttatttcagatttt 49285961  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 36671091 - 36671058
Alignment:
Q  261 tttttagaggaatgatatttgaacaaccattttt 294  Q
    ||||||||| ||||||||||||||||||||||||    
T  36671091 tttttagagaaatgatatttgaacaaccattttt 36671058  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 24010830 - 24010875
Alignment:
Q  140 gaattttgctcctgcagaaattttgggggacttagctagaaataggt 186  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24010830 gaattttgctc-tgcagaaattttgggagacttagctagaaataggt 24010875  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 19474021 - 19473988
Alignment:
Q  261 tttttagaggaatgatatttgaacaaccattttt 294  Q
    ||||||||| ||||||||||||||||||||||||    
T  19474021 tttttagagaaatgatatttgaacaaccattttt 19473988  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 36177901 - 36177933
Alignment:
Q  262 ttttagaggaatgatatttgaacaaccattttt 294  Q
    |||||||| ||||||||||||||||||||||||    
T  36177901 ttttagagaaatgatatttgaacaaccattttt 36177933  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 13332336 - 13332372
Alignment:
Q  271 aatgatatttgaacaaccatttttaaatagcttttgt 307  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13332336 aatgatatttgaacaaccatttttaaataacttttgt 13332372  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 17097878 - 17097833
Alignment:
Q  262 ttttagaggaatgatatttgaacaaccatttttaaatagcttttgt 307  Q
    |||||||| ||||||||||||||||||||||||  ||| |||||||    
T  17097878 ttttagagaaatgatatttgaacaaccattttttgataacttttgt 17097833  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 24468358 - 24468317
Alignment:
Q  266 agaggaatgatatttgaacaaccatttttaaatagcttttgt 307  Q
    |||| ||||||||||||||||||||||||||| | |||||||    
T  24468358 agagaaatgatatttgaacaaccatttttaaacaacttttgt 24468317  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 12042601 - 12042505
Alignment:
Q  39 agtaatatgcacttcttgattactcacatttttagagagggcaactattatgctgataagctagccactttaggtttaagtgtgatcaattttactt 135  Q
    ||||||||||| ||  |||||||||| || |||||||| || || |||| ||| ||||||||||| | | ||||||||| |||| | ||||| ||||    
T  12042601 agtaatatgcatttgatgattactcatatctttagagaaggtaattattgtgcagataagctagctaatctaggtttaactgtggttaatttcactt 12042505  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 33037515 - 33037547
Alignment:
Q  262 ttttagaggaatgatatttgaacaaccattttt 294  Q
    |||||||| ||||||||||||||||||||||||    
T  33037515 ttttagagaaatgatatttgaacaaccattttt 33037547  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Original strand, 22623385 - 22623415
Alignment:
Q  264 ttagaggaatgatatttgaacaaccattttt 294  Q
    |||||||||||||||||||||||||||||||    
T  22623385 ttagaggaatgatatttgaacaaccattttt 22623415  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 41750114 - 41750158
Alignment:
Q  266 agaggaatgatatttgaacaaccatttttaaatagcttttgtaat 310  Q
    |||| |||||||||| |||||||||||||||| | ||||||||||    
T  41750114 agagaaatgatatttaaacaaccatttttaaacaacttttgtaat 41750158  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 8577582 - 8577532
Alignment:
Q  258 ttctttttagaggaatgatatttgaacaaccatttttaaatagcttttgta 308  Q
    |||||||||||| ||||||||||| ||||||||||||  ||| ||||||||    
T  8577582 ttctttttagagaaatgatatttgtacaaccatttttgtataacttttgta 8577532  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 43775204 - 43775233
Alignment:
Q  265 tagaggaatgatatttgaacaaccattttt 294  Q
    ||||||||||||||||||||||||||||||    
T  43775204 tagaggaatgatatttgaacaaccattttt 43775233  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 45121570 - 45121537
Alignment:
Q  261 tttttagaggaatgatatttgaacaaccattttt 294  Q
    ||||||||| ||||||||||||||||||||||||    
T  45121570 tttttagagaaatgatatttgaacaaccattttt 45121537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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