View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_high_19 (Length: 320)
Name: NF11887_high_19
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 34272835 - 34272541
Alignment:
| Q |
11 |
gagagaagaatgcatctacttctacattaatatatacaaatggattgcgtggaatatataatttacaaaaacaggattgtattttctactagatattaca |
110 |
Q |
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| T |
34272835 |
gagagaagaatgcatctacttctacattaatatatacaaatggattgcgtggaatatataatttacaaaaacaggattgtattttctactagatattaca |
34272736 |
T |
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| Q |
111 |
ataagacacgtgttgatctacaaacagaaactaattcttactgctcactcattgccgtcgtcattttctgtctccaaatcaaatccatagccagcatcat |
210 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34272735 |
ataagacacgtgttgacctacaaacagaaactaattcttactgctcactcattgccgtcgtcattttctgtctccaaatcaaatccatagccagcatcat |
34272636 |
T |
|
| Q |
211 |
cttcatacaagtttggatccaaaggaccaacattacaatcattcttctgagcagtctttattgtaacttggggtgcagtgccatcctttgaacct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34272635 |
cttcatacaagtttggatccaaaggaccaacattacaatcattcttctgagcagtctttattgtaacttggggtgcagtgccatcctttgaacct |
34272541 |
T |
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