View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_high_23 (Length: 250)
Name: NF11887_high_23
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 32893836 - 32893690
Alignment:
| Q |
89 |
atgtatgtatatagttcctaaataaagcaaaaaattccccccacgatttactctcctcatcaaagatcacctaaacaaacaatctcacgtttcatctagc |
188 |
Q |
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| T |
32893836 |
atgtatgtatatagttcctaaataaagcaaaaaattccccccacgatttactctcctcatcaaagatcacctaa----acaatctcacgtttcatctagc |
32893741 |
T |
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| Q |
189 |
ttgtgctattaagttctaacnnnnnnngcttgtaactcacggtttcttcat |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32893740 |
ttgtgctattaagttctaactttttttgcttgtaactcacggtttcttcat |
32893690 |
T |
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