View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_high_3 (Length: 586)
Name: NF11887_high_3
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 49861344 - 49861872
Alignment:
| Q |
16 |
atgaacctctgttcccaaaacctagtaaaaaggattaagaaactgatgaaagtacagtaacaacagaagcttcagcttcacaaataaataaataaaccga |
115 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
49861344 |
atgatcctctgttcccaaaaccttgtaaaaaggattaagaaactgatgaaagtacagtaaca---gtagcttcagcttcacaaataaataaataaaccga |
49861440 |
T |
|
| Q |
116 |
aacctactcactccaaccaaccaaaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
215 |
Q |
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| T |
49861441 |
aacctactcactccaaccaacc-----aaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
49861535 |
T |
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| Q |
216 |
cagatgaattcgaacatggataatgaaagagaaatcgaaaacaattatgccctcagcggcaagataatgctaaccgccattatcattctcttcgccgtta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861536 |
cagatgaattcgaacatggataatgaaagagaaatcgaaaacaattatgccctcagcggcaagataatgctaaccgccattatcattctcttcgccgtta |
49861635 |
T |
|
| Q |
316 |
tcataataatgctctgtctccattttctatttcgatactaccttctacgtgatcgcacacgtcaacacctccgccgtaaccgccatctccgtcgtcaacc |
415 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49861636 |
tcataataatgctctgtctccattttctaattcgatactaccttctacgtgatcgcacacgtcaacac------------------ctccgtcgtcaacc |
49861717 |
T |
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| Q |
416 |
tttcatcttttacgtggacccgtccgcccctgcttcacttacactcgccgtctctcggggccttgatgcctccgtgatctcgtctctcccagttttcaat |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49861718 |
tttcatcttttacgtggacccgtccgcccctgcttcactgacactcgccgtctctcggggccttgatgcctccgtgatctcgtcgctcccagttttcaat |
49861817 |
T |
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| Q |
516 |
ttttcctccaacacagatcaagcggtcgaatgcgcggtttgtttatcggagtttg |
570 |
Q |
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| T |
49861818 |
ttttcctccaacacggatcaagcggtggaatgcgctgtttgtttatcggagtttg |
49861872 |
T |
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