View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11887_low_10 (Length: 426)
Name: NF11887_low_10
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 37662920 - 37662513
Alignment:
| Q |
11 |
gcaggagaattaatacatttgaaactctaagatagacgagctgtattcgtcaagctccacatgcaaaagggaaatattgaaagnnnnnnnnn---atgag |
107 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37662920 |
gcagaagaataaatacatttgaaactctaagatagaccagctgtattcgtcaagctccacatgcaaaagggaaatattgaaagttttttttttttatgag |
37662821 |
T |
|
| Q |
108 |
atgcgcaaaggatatgcctatatgtgattgtaatttgtatgtatatatgcaggggaaatggtagtaatagcaaatccttttctatacttgtgacaataat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37662820 |
atgcgcaaaggatatgcctatatgtgattgtaatttgtatgtatatatgcaggggaaatggtagtaatagcaaatccttttctgtacttgtgacaataat |
37662721 |
T |
|
| Q |
208 |
gagaacagttagactggttatcagcttgtgaaactattctatggttttttatggggccactttccaatagagttttgggttgcggctttcatatctcatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37662720 |
gagaacagttagactggttatcagcttgtgaaactattctatggttttttatggggccactttccaatagagttttgggttgcggctttcatatctcatt |
37662621 |
T |
|
| Q |
308 |
tgtatattagcattactttctgttactgcaagaactgagcggatagcttcagccaattttgcgttgtccgtgagcaagctgaatgttgtttcttagcaac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
37662620 |
tgtatattagcattactttctgttactgcaagaactgagcggatagcttcagccaattttgcgttgtccttgagcaagctgaatgttgtttcttagtaac |
37662521 |
T |
|
| Q |
408 |
cacttctt |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
37662520 |
cacttctt |
37662513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University