View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_13 (Length: 411)
Name: NF11887_low_13
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 115 - 394
Target Start/End: Original strand, 32838148 - 32838427
Alignment:
| Q |
115 |
gcttgtctttttccaattgaactgcaatacccttcatcacaccaactgttgaacggatatcctaaaacaaacccagaaaaatgtaacacaataagtgata |
214 |
Q |
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| T |
32838148 |
gcttgtctttttccaattgaactgcaatacccttcatcacaccaactgttgaacggatatcctaaaacaaacccagaaaaatgtaacacaataagtgata |
32838247 |
T |
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| Q |
215 |
aacaaaatgattgaatttatttacaaacacgaaaaaatgctcctttgattaaaggataccctaaaaaagaagggtttgagagtttacagagatgataggt |
314 |
Q |
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| T |
32838248 |
aacaaaatgattgaatttatttacaaacacgaaaaaatgctcctttgattaaaggataccctaaaaaagaagggtttgagagtttacagagatgataggt |
32838347 |
T |
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| Q |
315 |
tgaatatcagtgccgtaagtggaagttaagttctttatccgaccagaaacgccgccgtgtgaacttgacgccatgaatct |
394 |
Q |
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| T |
32838348 |
tgaatatcagtgccgtaagtggaagttaagttctttatccgaccagaaacgccgccgtgtgaacttgacgccatgaatct |
32838427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32838033 - 32838069
Alignment:
| Q |
1 |
ggtttttattgttcgctcatcacatgaccaatattac |
37 |
Q |
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| T |
32838033 |
ggtttttattgttcactcatcacatgaccaatattac |
32838069 |
T |
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