View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_14 (Length: 393)
Name: NF11887_low_14
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 53681205 - 53681573
Alignment:
| Q |
1 |
tagtctgcaaccacatttccaaacataagtatattcatattcatattcacatgcaatttgagtgaacaaatgtgtgtgattccttggcttattttggtat |
100 |
Q |
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| T |
53681205 |
tagtctgccaccacatttccaaacataagtatat------tcatattcacatgcaatttgagtgaacaaatgtgtgtgattccttggcttattttggtat |
53681298 |
T |
|
| Q |
101 |
caagaaatttcaagttcaacaaggaaatatctcaaaagaaaatggtgacataaatctaatgaaattttcaaatagtactagtactaaccataagagggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681299 |
caagaaatttcaagttcaacaaggaaatatctcaaaagaaaatggtgacataaatctaatgaaattttcaaatagtactagtactaaccataagagggat |
53681398 |
T |
|
| Q |
201 |
gcggaatcatcatcaaagtattgatggaaccatattcatttctataatagttgatgactgcaaaaacaaatcccttctatctgataattaaatactagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681399 |
gcggaatcatcatcaaagtattgatggaaccatattcatttctataatagttgatgactgcaaaaacaaatcccttctatctgataattaaatactagca |
53681498 |
T |
|
| Q |
301 |
gcacaaaaacacttgactcaaattttgtgtactcatcgatccttgttgcaatttgatcagcttcacaagttagtctgtg |
379 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681499 |
gcacaaaaacacttgactcaaattttgtgtactc----atccttgttgcaatttgatcagcttcacaagttagtctgtg |
53681573 |
T |
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