View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_16 (Length: 370)
Name: NF11887_low_16
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 6 - 354
Target Start/End: Complemental strand, 53681016 - 53680664
Alignment:
| Q |
6 |
agacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatttaccatatcttaat |
105 |
Q |
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| T |
53681016 |
agacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatttaccatatcttaat |
53680917 |
T |
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| Q |
106 |
aaataagtaaaattaccaaaaacatgtaataaatctgaatgagaaaacatgtaaccatggagtataaggttaaaccaagagtcatccatccaaatgtgat |
205 |
Q |
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| T |
53680916 |
aaataagtaaaattaccaaaaacatgtaagaaatctgaatgagaaaacatgtaaccatggagtataaggttaaaccaagagtcatccatccaaatgtaat |
53680817 |
T |
|
| Q |
206 |
caacttagtggttgcataaaattagtgctatttgagagtctggttcacaaaacaccttttcatttccaactccaagccattttcag-----gccatgaac |
300 |
Q |
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| T |
53680816 |
caac-tagtgggtgcataaaattagtgctatttgagagtctggttcacaaaacaccttttcatttccaactccaagccattttcaggccatgccatgaac |
53680718 |
T |
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| Q |
301 |
aatttcaattgatgatttggttttacgttaatgtttgtactttgtattgattct |
354 |
Q |
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| T |
53680717 |
aatttcaattgatgatctggttttacgttaatgtttgtactttgtattgattct |
53680664 |
T |
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