View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_17 (Length: 358)
Name: NF11887_low_17
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 36962589 - 36962309
Alignment:
| Q |
15 |
atgaagcaatggtgacagcttcctcttccttcagagaataatatgtctctatttgagatgcaagatcctataatattttgagctgcaattataatttata |
114 |
Q |
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| T |
36962589 |
atgaagcaatggtgacagcttcctcttccttcagagaataatatgtgtctatttgagatgcaagatcctataatattttgagctgcaattataatttata |
36962490 |
T |
|
| Q |
115 |
ttgtcatattgaaggctaaggacaaccatgatgcaagtattcaaaaatcaaaacaatcctacaaaatctaccagccaaaattagcaaatatctgaatcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962489 |
ttgtcatattgaaggctaaggacaaccatgatgcaagtattcaaaaatcaaaacaatcctacaaaatctaccagccaaaattagcaaatatctgaatcct |
36962390 |
T |
|
| Q |
215 |
gaagttgaagctagcacaaatatacgtaaaagacagatagaagcgcatgattatctgtatgcactatgcagtaggggaggg |
295 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
36962389 |
gaagttgaagctagcacaaatatacgcaaaagacagatagaagcacatgaatatctgtatgcactatgcagtaggggaggg |
36962309 |
T |
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