View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_2 (Length: 740)
Name: NF11887_low_2
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 722
Target Start/End: Complemental strand, 16101057 - 16100362
Alignment:
| Q |
11 |
cagagagagtttacaatccaaaattacattgcacaccaaagttgcgagagcagctaaagaaaataaaaattaggaaattgcctttaaacacaactgacaa |
110 |
Q |
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| T |
16101057 |
cagagagagtttacaatccaaaattacattacacaccaaagttgcgagagcagctaaagaaaataaaaattaagaaattgcctttaaacacaactgacaa |
16100958 |
T |
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| Q |
111 |
catagaatgtaacctctaagtgaggtaatcaaaatcaaactatacataatacgattttaacaaccaacatgtctgaactttagccttttaagttaaggaa |
210 |
Q |
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| T |
16100957 |
catagaatgtaacctctaagtgag-taatcaaaatcaaactatacataatacgattttaacaaccaacatgtctgaactttagccttttaagttaaggaa |
16100859 |
T |
|
| Q |
211 |
ttgagatggtcaaccttatgcttaaaaattctcgcattctaattctccttcgaaataatattgaaagctaggcgagactttttgaagaagatgatctaga |
310 |
Q |
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| T |
16100858 |
ttgagatggtcagccttatgcttaaaaatcctcgcattct---tctccttccaaataatattgaaagctaggcgagactttttgaagaagatgatctaga |
16100762 |
T |
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| Q |
311 |
aagttaccataatgaagtgtttctaagcctaaccagacagaaatatgactccaaacccgcacgaaaaattcacattgaaaaaataagtgatatcggtctt |
410 |
Q |
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| T |
16100761 |
aagttaccataatgaagtgtttataagcctaaccagacataaatatgactccaaacccgcacgaaaaagtcacattgaaaaaataagtgatatcagtctt |
16100662 |
T |
|
| Q |
411 |
ccaaacaaccacataagggcatttagtaggggttttcagatatgctccatacgagggttttcccctttgctaaaccaaggcatatgaaacgacaaggatc |
510 |
Q |
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| T |
16100661 |
ccaaacaaccacataagggcatttagtaggggttttcagatctgctccatacgagggttttcccctttgctaaaccaaggcatatgaaatgacaaggatc |
16100562 |
T |
|
| Q |
511 |
caactaggatgggcaaaattctcacacagacctagaaactcatcactaacattaactcccattacaccactcttagaaaagttgaccttaagtccaaatg |
610 |
Q |
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| T |
16100561 |
caactaggatgggcaaaattctcacacagacatagaaactcatcactaacattaactcccattacactactcttagaaaagtcgaccttaagtc------ |
16100468 |
T |
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| Q |
611 |
caagtccaaagcacctgtgattgatttttaatgaccagaggcttctaactaaagtctccccaaagaaaagtgtatcatccgcatattgaaggtgggttat |
710 |
Q |
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| T |
16100467 |
------caaagcacatgtgaatggttttaaatgaccagaggcttctaactaaagtctccccaaagaaaagtgtatcatccgcatattgaaggtgggttat |
16100374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 16253574 - 16253532
Alignment:
| Q |
128 |
aagtgaggtaatcaaaatcaaactatacataatacgattttaa |
170 |
Q |
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| T |
16253574 |
aagtgaggtaatcaaaatcaaacaatacataattcgattttaa |
16253532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 15224556 - 15224500
Alignment:
| Q |
121 |
aacctctaagtgaggtaatcaaaatcaaactatacataatacgattttaacaaccaa |
177 |
Q |
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| T |
15224556 |
aacctctaagtggggtaatcaaaatcaaacaaaaaataatatgattttaaccaccaa |
15224500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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