View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_24 (Length: 291)
Name: NF11887_low_24
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 33769938 - 33770201
Alignment:
| Q |
17 |
aaattgtgctatgtaagaacctaaatttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgattttgtgtagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33769938 |
aaattgtgctatgtaagaacctaaatttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgaatttgtgtagc |
33770037 |
T |
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| Q |
117 |
ttttnnnnnnnttgcggtgactcaccgtgatccagtcaatctcttcggactctctgaacacgcattacctataagcatgtgtgccattttctacatgtcg |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33770038 |
ttttaaaaaaattgcggtgactcaccgtgatccagtcaatctcttcggactctctgaacacgcattacctttaagcatgtgtgccattttctacatgtcg |
33770137 |
T |
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| Q |
217 |
agacattcttgccgtcaaaacatagaagctacaaaactaaacttctactaaaacgttgtttctt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33770138 |
agacattcttgccgtcaaaacatagaagctacaaaactaaacttctactaaaacgttgtttctt |
33770201 |
T |
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