View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_26 (Length: 243)
Name: NF11887_low_26
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 6490079 - 6490291
Alignment:
| Q |
13 |
caaaggtgaaaaccctactgtgtttggaaccattcaaacttatttgaaagatgctaaggagagaatgttgttggcatcaaaggctgctgagaaaatgggg |
112 |
Q |
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| T |
6490079 |
caaaggtgaaaaccctactgtgtttggaaccattcaaacttatttgaaagacgctaaggagagaatgttgttggcatcaaaggctgctgagaaaatgggg |
6490178 |
T |
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| Q |
113 |
ataccaatgggatttaagttggttagaggtgcttatatgtctagtgaaagaaaattggctgctgatttgggatatgcttcaccaattcataacactatta |
212 |
Q |
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| T |
6490179 |
ataccaatgggatttaagttggttagaggtgcttatatgtctagtgaaagaaaattggctgctgatttgggatatgcttcaccaattcataacactatta |
6490278 |
T |
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| Q |
213 |
aggatacacataa |
225 |
Q |
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||||||||||||| |
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| T |
6490279 |
aggatacacataa |
6490291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 6348598 - 6348398
Alignment:
| Q |
26 |
cctactgtgtttggaaccattcaaacttatttgaaagatgctaaggagagaatgttgttggcatcaaaggctgctgagaaaatggggataccaatgggat |
125 |
Q |
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| T |
6348598 |
cctattgtgtttggaacaattcaaacttatttgaaagatgctaaggagagattgtttcttgcaacaaaagctgctgaaaaaattggaattcctatgggat |
6348499 |
T |
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| Q |
126 |
ttaagttggttagaggtgcttatatgtctagtgaaagaaaattggctgctgatttgggatatgcttcaccaattcataacactattaaggatacacataa |
225 |
Q |
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| T |
6348498 |
ttaaattggttagaggtgcttatatgtcaacagaaagtacattggctgaatcttttgggtctaagtcaccaattcatgatactattaaagatacacataa |
6348399 |
T |
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| Q |
226 |
t |
226 |
Q |
| |
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| |
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| T |
6348398 |
t |
6348398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 6333330 - 6333191
Alignment:
| Q |
14 |
aaaggtgaaaaccctactgtgtttggaaccattcaaacttatttgaaagatgctaaggagagaatgttgttggcatcaaaggctgctgagaaaatgggga |
113 |
Q |
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|||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||| |||| |||||||| |||| || | |
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| T |
6333330 |
aaagatgataaccctattgtgtttggaacaattcaaacttatttgaaagatgctaaggagagattgtttcttgcaacaaaagctgctgaagaaattggaa |
6333231 |
T |
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| Q |
114 |
taccaatgggatttaagttggttagaggtgcttatatgtc |
153 |
Q |
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| T |
6333230 |
ttcctatgggatttaaattggttagaggtgcttatatgtc |
6333191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 6326362 - 6326235
Alignment:
| Q |
26 |
cctactgtgtttggaaccattcaaacttatttgaaagatgctaaggagagaatgttgttggcatcaaaggctgctgagaaaatggggataccaatgggat |
125 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||| |||| |||||||| |||| || || || ||||||| |
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| T |
6326362 |
cctattgtgtttggaacaattcaaacttatttgaaagatgctaaggagagattgtttcttgcaacaaaagctgctgaagaaattggaattcctatgggat |
6326263 |
T |
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| Q |
126 |
ttaagttggttagaggtgcttatatgtc |
153 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
6326262 |
ttaaattggttagaggtgcttatatgtc |
6326235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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