View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_29 (Length: 238)
Name: NF11887_low_29
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22278535 - 22278314
Alignment:
| Q |
1 |
aatgtaattcctcaacccaataccatcaattttctcacataaaaccctcaattccttccggtgcgatatcgggtccttagggtttgtcgaaaagtttgnn |
100 |
Q |
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| T |
22278535 |
aatgtaattcctcaacccaataccatcaattttctcacataaaaccctcaattccttccggtgcgatatcgggtccttagggtttgtcgaaaagtttgtt |
22278436 |
T |
|
| Q |
101 |
nnnnncgaggtttcggcattagagtttgaaattagggttttggattgggattgttgttcgagtgattggaggaattggaagcggtgagtgagagattgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278435 |
tttttcgaggtttcggcattagagtttgaaattagggttctggattgggattgttgttcgagtgattggaggaattggaagcggtgagtgagagattgtt |
22278336 |
T |
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| Q |
201 |
ggagagaggtgaagtgggaatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
22278335 |
ggagagaggtgaagtgggaatc |
22278314 |
T |
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