View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_3 (Length: 726)
Name: NF11887_low_3
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 710
Target Start/End: Original strand, 39581231 - 39581942
Alignment:
| Q |
1 |
gaacgatagactgttgaattgccatggggagagagttgataattgtgtttgtttgaatgannnnnnnnnaagctgtgatgactgctattcatagaagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39581231 |
gaacgatagactgttgaattgccatggggagagagttgataattgtgtttgtttgaatgatttttttttaagctgtgatgactgctattcatagaagtta |
39581330 |
T |
|
| Q |
101 |
gtagaagtagggagcgggagaagagaagggggagaccaatgaagaagacttgcataagaagaaaact--atctgtggactgtgattaagttgtccgcttt |
198 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
39581331 |
gtagaagtagggagtgggagaagagaagggggggaccaatgaagaagacttgcataagaagaagactctatctgtggactgtgattaagttgtccgcttt |
39581430 |
T |
|
| Q |
199 |
gaattttctttttccttatttgtttctcttcatannnnnnnaatgaatatttagaatttgatttatccactattggagctatttgagacatgaaaaatgg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581431 |
gaattttctttttccttatttgtttctcttcatatttttttaatgaatatttagaatttgatttatccactattggagctatttgagacatgaaaaatgg |
39581530 |
T |
|
| Q |
299 |
aagttccctgtacgttaaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattcaaatgctgtggaggatgaatta |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581531 |
aagttccctgtacgttaaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattcaaatgctgtggaggatgaatta |
39581630 |
T |
|
| Q |
399 |
agaagctgataataatgcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgat |
498 |
Q |
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| T |
39581631 |
agaagctgataataatgcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgat |
39581730 |
T |
|
| Q |
499 |
ttgtcgcgacgttcttataatggaaattgatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgtt |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581731 |
ttgtcgcgacgttcttataatggaaattgatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgtt |
39581830 |
T |
|
| Q |
599 |
cagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaa |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
39581831 |
cagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaaa |
39581930 |
T |
|
| Q |
699 |
attactaaaatg |
710 |
Q |
| |
|
|||||||||||| |
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|
| T |
39581931 |
attactaaaatg |
39581942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 309 - 541
Target Start/End: Original strand, 39576983 - 39577217
Alignment:
| Q |
309 |
tacgttaaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattca----aatgctgtggaggatgaattaagaagc |
404 |
Q |
| |
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|||||||| || ||||||||| ||| ||||||| || || ||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||| |
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| T |
39576983 |
tacgttaagacgtgattggttagttaggattttagatacatttattataataatttatttatttgttcaattcaatgctgcggagaatgaattaagaagc |
39577082 |
T |
|
| Q |
405 |
tgataataatgcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaa--ttcatgaggtccaaattggtagtatgatttgt |
502 |
Q |
| |
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| |||||||||| ||||||| |||||||| | ||||||| || | | || |||| |||| ||| ||||||||||||||| ||||||||||| |||| |
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| T |
39577083 |
agctaataatgca-acaaaatggaaaggcactagagtctaagtaac-ccttggaggg-catgaaaattttcatgaggtccaaactggtagtatgacttgt |
39577179 |
T |
|
| Q |
503 |
cgcgacgttcttataatggaaattgatcagaaatttgtg |
541 |
Q |
| |
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| T |
39577180 |
tccgacgttcttgtaatgg-aatagatcagaaatttgtg |
39577217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 39571750 - 39571871
Alignment:
| Q |
256 |
ttgatttatccactattggagct--atttgagacatgaaaaatggaagttccctgtacgttaaaacatgattggttggtttggattttcgacgcacttat |
353 |
Q |
| |
|
|||||||||| |||| |||| || ||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||| | |||| |||||||||| |
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| T |
39571750 |
ttgatttatcaactactggaactttatttgagacatgaaaaatgaaagttccctgtacgttcaaatgtgattggttagttttggttttagacgcacttaa |
39571849 |
T |
|
| Q |
354 |
tataataatttatttatttatt |
375 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
39571850 |
tataataatttgtttatttatt |
39571871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 597 - 694
Target Start/End: Original strand, 39525432 - 39525529
Alignment:
| Q |
597 |
ttcagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaa |
694 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| | || |||| ||| | ||||||||||||||||| |
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| T |
39525432 |
ttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaa |
39525529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 699
Target Start/End: Original strand, 39521945 - 39522034
Alignment:
| Q |
610 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaaa |
699 |
Q |
| |
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|||| ||||||| |||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
39521945 |
acgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaa |
39522034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 39544741 - 39544822
Alignment:
| Q |
616 |
atatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaa |
697 |
Q |
| |
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| T |
39544741 |
atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaa |
39544822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 368
Target Start/End: Original strand, 39582170 - 39582290
Alignment:
| Q |
244 |
aatatttagaatttgatttatccactattggagctatttgagacatgaaaaatggaagttccctgtacgttaaaacatgattggttggtttggattttcg |
343 |
Q |
| |
|
||||||| ||||||||||| | |||| |||| | ||| ||||| ||||||||| || ||||||| |||||| ||||||||||||||||||| | | |
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|
| T |
39582170 |
aatatttgaaatttgatttaacaactactggaaccattagagacctgaaaaatgaaaaatccctgt----taaaacgtgattggttggtttggattatag |
39582265 |
T |
|
| Q |
344 |
acgcacttattataataatttattt |
368 |
Q |
| |
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| ||||||| ||||||||||||||| |
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| T |
39582266 |
atgcacttaatataataatttattt |
39582290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 39511867 - 39511908
Alignment:
| Q |
70 |
aagctgtgatgactgctattcatagaagttagtagaagtagg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
39511867 |
aagctgtgatgactgctattcatagaagttagtacaagtagg |
39511908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 39522140 - 39522194
Alignment:
| Q |
76 |
tgatgactgctattcatagaagttagtagaagtagggagcgggagaagagaagggg |
131 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
39522140 |
tgatgattgctattcatagaagttggtagaagtagggag-tggagaagagaagggg |
39522194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 697
Target Start/End: Original strand, 39576590 - 39576677
Alignment:
| Q |
610 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaa |
697 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||| | ||||| | ||||||| | |||| | ||| |||| ||||||||||||||||| |
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| T |
39576590 |
acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaagaa |
39576677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 39513124 - 39513182
Alignment:
| Q |
367 |
ttatttattcaaatgctgtggaggatgaattaagaagctgataataatgcagccaaaat |
425 |
Q |
| |
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||||||||| |||||||| || ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
39513124 |
ttatttatttaaatgctgctgaaaatgaattaagaggctgctaataatgcagccaaaat |
39513182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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