View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_30 (Length: 233)
Name: NF11887_low_30
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 36594285 - 36594483
Alignment:
| Q |
15 |
ataggagggactccaattcatataagaaaaattcaaacctgacttttgaattagaagaaattagaattagattcttctccttagaaattaggaaaacaat |
114 |
Q |
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| T |
36594285 |
ataggagggactccgattcatataagaaaaattcaaacctcacttttgaattagaagaaattagaattagattcttctccttagaaattaggaaaacaat |
36594384 |
T |
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| Q |
115 |
acatcaagtgtaaaagacttatttgatcgatcgtgtatattaaaaataatatttacagctagtatttacaaaattcgactatctagaagtcctacgctaa |
214 |
Q |
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||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36594385 |
acatcaagtgt-aaagatttgtttgatcgatcgcgtatattaaaaataatatttacagctagtatttacaaaattcgactatttagaagtcctacgctaa |
36594483 |
T |
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