View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11887_low_31 (Length: 227)
Name: NF11887_low_31
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_31 |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 47946057 - 47946266
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgattnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
47946057 |
tgttccgcctatatacgacgccttcgtttgtattctatgttttaccaatctctattcgtcttgagtaaggatctgggttttaataaaatttgttgattaa |
47946156 |
T |
 |
| Q |
101 |
nnnnnntgattgtggaggagaaaaattaaagaggtgagatgttttataatgggttggaccgctactaaacaaacaaattacttatcaactatctaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47946157 |
aaaaaatgattgtggaggagaaaaattaaagaggtgagatgttttataatgggttggaccgctactaaacaaacaaattacttatcaactatctaaaatt |
47946256 |
T |
 |
| Q |
201 |
accacctagt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
47946257 |
accacctagt |
47946266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 32010145 - 32010236
Alignment:
| Q |
3 |
ttccgcctatatacgacgc-cttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
||||||||||||||||||| || | ||||||||| || | |||||||||| ||||| ||||||| |||||||||| || ||||||||||| |
|
|
| T |
32010145 |
ttccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttg |
32010236 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28967231 - 28967329
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| | ||||| |||||||||| ||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
28967231 |
tgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctggttttaaataaaatttgctgatt |
28967329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 52009181 - 52009277
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggt-ttttaataaaatttgctg |
95 |
Q |
| |
|
||||||||||||||||| |||||| ||||| || || |||| |||||||||||||||| ||| | | ||||||||| ||||||||||||||||| |
|
|
| T |
52009181 |
tgttccgcctatatacggcgccttatgtttgcatgctcagtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg |
52009277 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 37751576 - 37751501
Alignment:
| Q |
23 |
ttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||||||||||| | | ||| |||||||||||||| | |||| || |||||| ||||||||||||||||||||| |
|
|
| T |
37751576 |
ttcgtttgtattttctatttcaccgatctctattcatcttgaatagagatctgaattttaataaaatttgctgatt |
37751501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 12296579 - 12296625
Alignment:
| Q |
49 |
tctctattcgttttgagtaaggatctggtttttaataaaatttgctg |
95 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
12296579 |
tctctattcgttttgagcagagatctggttttaaataaaatttgctg |
12296625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 21983550 - 21983501
Alignment:
| Q |
49 |
tctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||| ||||| ||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
21983550 |
tctctgttcgtcttgagcagggatctgatttttaataaaatttgctgatt |
21983501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47456798 - 47456700
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||| | ||||| |||| ||||| ||||| ||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
47456798 |
tgttccgcctatatactgcgcctttcatttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggtttttaataaaatttgttgatt |
47456700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25438714 - 25438813
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcct-tcgtttgtattctatgtttt-accgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||||||||||||||| || | |||||||||||| |||||| | || | ||| ||||| ||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
25438714 |
tgttccgcctatatacggggcatatcgtttgtattcgctgttttcatcggtatctgttcgtcttgagtatggatctggtttttaataaaatttgttgatt |
25438813 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48058397 - 48058306
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaattt |
91 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| | ||| |||| ||||| || || ||||| | ||| |||||||||||||||||| |
|
|
| T |
48058397 |
tgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtttttaataaaattt |
48058306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28534229 - 28534131
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttcg-tttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| | | |||| ||||| ||||| ||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
28534229 |
tgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggtttttaataaaatttgctgatt |
28534131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 33719321 - 33719413
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcc-ttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaattt |
91 |
Q |
| |
|
|||||||||||||| | |||| || ||||||||||| |||| |||||||||| ||||| ||||| | |||||||||| ||||||||||||| |
|
|
| T |
33719321 |
tgttccgcctatattcagcgccgtttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt |
33719413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 9350069 - 9350159
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaattt |
91 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| | | ||| |||||||||| ||||| ||| | | || ||||||||||||||||||| |
|
|
| T |
9350069 |
tgttccgcctatatacggcgccttggtttgtactttttgtaacaccgatctctgttcgtcttgtgcagagacctggtttttaataaaattt |
9350159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6726144 - 6726051
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| |||| |||||||||| ||||| ||||| | ||||||||| |||||||||||||| |
|
|
| T |
6726144 |
tgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg |
6726051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 9427759 - 9427711
Alignment:
| Q |
44 |
accgatctctattcgttttgagtaaggatctggtttttaataaaatttg |
92 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
9427759 |
accgatctctgttcgtcttgagcaaggatctggtttttaaataaatttg |
9427711 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50588997 - 50588903
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||| |||||||| ||||||| ||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
50588997 |
tgttccgcctatatacggcgcctttcgtttgtatc----gtttcaccgatctttattcgtcttgagcagagatctagtttttaataaaatttgctgatt |
50588903 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9313065 - 9312972
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcc-ttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||| || |||| |||| ||||| ||||| ||||| | ||||| ||| |||||||||||||| |
|
|
| T |
9313065 |
tgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatctcgttgtttaataaaatttg |
9312972 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 18844950 - 18844913
Alignment:
| Q |
55 |
ttcgttttgagtaaggatctggtttttaataaaatttg |
92 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
18844950 |
ttcgttttgagtagggatccggtttttaataaaatttg |
18844913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27905787 - 27905880
Alignment:
| Q |
1 |
tgttccgcctatatacgacgcct-tcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||| ||| || || |||| ||||||||| | ||||| | |||||||||| ||||||||| |||| |
|
|
| T |
27905787 |
tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttg |
27905880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29487457 - 29487548
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttg |
92 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||| | |||| ||||| ||| | ||||| | |||||||||||||||||||||||| |
|
|
| T |
29487457 |
tgttccgcctatatacggctcctttagttgtattctatgaatcaccggtctctgttcatcttgagcagggatctggtttttaataaaatttg |
29487548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 40470769 - 40470840
Alignment:
| Q |
23 |
ttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgct |
94 |
Q |
| |
|
|||||||||||||| |||| || ||||||| ||||| ||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
40470769 |
ttcgtttgtattctctgttaaactgatctctgttcgtcttgagcaagaatctgatttttaataaaatttgct |
40470840 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 15361088 - 15361178
Alignment:
| Q |
9 |
ctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||||||| |||||| |||||||||| | ||||| ||| ||||||||||| ||||| | |||| || |||||||||||||||| ||||| |
|
|
| T |
15361088 |
ctatatacggcgcctttcgtttgtattatctgtttcaccagtctctattcgtcttgagcagggatttgatttttaataaaatttgttgatt |
15361178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10173304 - 10173211
Alignment:
| Q |
1 |
tgttccgcctatatacgacgc-cttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaa-taaaatttg |
92 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||| ||||||| |||||||||| ||||| ||||| | | |||||||| |||| ||||||||| |
|
|
| T |
10173304 |
tgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctggttgttaagtaaaatttg |
10173211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13337606 - 13337673
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgagta |
67 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||| ||||||| |
|
|
| T |
13337606 |
tgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttgagta |
13337673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 16960314 - 16960368
Alignment:
| Q |
44 |
accgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||| ||||||||||| ||||| | | |||||||||||||||||||||| ||||| |
|
|
| T |
16960314 |
accggtctctattcgtcttgagaaggaatctggtttttaataaaatttgttgatt |
16960368 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 44594089 - 44594126
Alignment:
| Q |
55 |
ttcgttttgagtaaggatctggtttttaataaaatttg |
92 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44594089 |
ttcgttttgagtagggatctggtttttattaaaatttg |
44594126 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 8843833 - 8843740
Alignment:
| Q |
5 |
ccgcctatatacgacgcctt-cgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
||||||||||||| ||| || |||||||||| | ||||| |||| ||||| ||||| ||||| | |||| || |||||||||||||||||||||| |
|
|
| T |
8843833 |
ccgcctatatacggcgcatttcgtttgtatt-tctgtttcaccggtctctgttcgtcttgagaagggatttgatttttaataaaatttgctgatt |
8843740 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12197800 - 12197735
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgag |
65 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| || || |||||||||||||||| ||||| |
|
|
| T |
12197800 |
tgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgag |
12197735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12442228 - 12442163
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgag |
65 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| || || |||||||||||||||| ||||| |
|
|
| T |
12442228 |
tgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgag |
12442163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 39183851 - 39183795
Alignment:
| Q |
42 |
ttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||||||||| | ||||| |||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
39183851 |
ttaccgatctttgttcgtcttgaatagggatatggtttttaataaaatttgctgatt |
39183795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8297827 - 8297922
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttcgtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttgctg |
95 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||| |||| |||| ||||| ||||| ||||||| |||||| || || |||||||||||||| |
|
|
| T |
8297827 |
tgttccgcctatgtacaacgcctttttttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctg |
8297922 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 10175041 - 10175128
Alignment:
| Q |
7 |
gcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||| |||| ||||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
10175041 |
gcctatatacgatgccttttgtttgtattcttaatttcaccggtctctgttcattttgagtaaggatctggttgattaataaaatttg |
10175128 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 16180554 - 16180483
Alignment:
| Q |
27 |
tttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtttttaataaaatttgctgatt |
98 |
Q |
| |
|
|||||||| | ||||| |||||||| | ||||| ||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
16180554 |
tttgtattatctgtttcaccgatctttgttcgtcttgagcagagatctgatttttaataaaatttgctgatt |
16180483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 20701522 - 20701430
Alignment:
| Q |
1 |
tgttccgcctatatacgacgccttc-gtttgtattctatgttttaccgatctctattcgttttgagtaaggatctggtt-tttaataaaatttg |
92 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||| ||||| | |||| ||||| |||||||||||||| |
|
|
| T |
20701522 |
tgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaataaaatttg |
20701430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University