View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11887_low_4 (Length: 598)

Name: NF11887_low_4
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11887_low_4
NF11887_low_4
[»] chr8 (7 HSPs)
chr8 (21-387)||(18100605-18100971)
chr8 (21-338)||(18085862-18086175)
chr8 (459-584)||(18100407-18100533)
chr8 (97-288)||(18116290-18116480)
chr8 (459-545)||(18085586-18085672)
chr8 (330-387)||(18085744-18085801)
chr8 (505-544)||(18116212-18116251)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Complemental strand, 18100971 - 18100605
Alignment:
Q  21 atcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaaaagccaacggtgaagtagtgtatttggaaatcttttggagatactt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18100971 atcaagactccagattacaagtggactttgatgtagttagtgattgttaatcgaaagccaacggtgaagtagtgtatttggaaatcttttggagatactt 18100872  T
Q  121 caaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaaggcatttgatgttaaaaaagcaggttaatcc 220  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18100871 caaatgtatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaaggcatttgatgttaaaaaagaaggttaatcc 18100772  T
Q  221 aaattaatgattagggaagacgatgggtttaaattaaaatgaggtcctaaacctactatatactgtgatttaaattatagtatatagagtaaaattttca 320  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18100771 aaattaatgattagggaagacgatgggtttaaattaaaatcaggtcctaaacctactatatactgtgatttaaattatagtatatagagtaaaattttca 18100672  T
Q  321 ggcattcaccaacaaatacgaaaagagctgacaaaatgtctacgacataacagcagaaaagattgtg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18100671 ggcattcaccaacaaatacgaaaagagctgacaaaatgtctacgacataacagcagaaaagattgtg 18100605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 18086175 - 18085862
Alignment:
Q  21 atcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaaaagccaacggtgaagtagtgtatttggaaatcttttggagatactt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||||||||||||    
T  18086175 atcaagactccagattacaagtggactttgatgtagttagtgattgttaatcaagagccaatggtgaagtagtgtgtttggaaacctgttggagatactt 18086076  T
Q  121 caaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaaggcatttgatgttaaaaaagcaggttaatcc 220  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||  |||||||||    
T  18086075 caaatgtatgtttgaggtctttccaacgaattttcaaacatgcactgaatcatgattttctgattttaaggcattgaatgttaagaaagtgggttaatcc 18085976  T
Q  221 aaattaatgattagggaagacgatgggtttaaattaaaatgaggtcctaaacctactatatactgtgatttaaattatagtatatagagtaaaattttca 320  Q
    |||| |||||||||| |||| |||||||||| |||||||| ||| ||||||  ||||| ||||||||||| |||||||||    ||||||| ||||||||    
T  18085975 aaatcaatgattaggcaagatgatgggtttatattaaaatcaggacctaaatatactagatactgtgattcaaattatag----tagagtacaattttca 18085880  T
Q  321 ggcattcaccaacaaata 338  Q
    ||||| ||||||| ||||    
T  18085879 ggcatccaccaaccaata 18085862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 459 - 584
Target Start/End: Complemental strand, 18100533 - 18100407
Alignment:
Q  459 attagagtacatttgtaataacagaataaaggcataaagtttattctctcatttcttttccatttttcattattttatagcaacgaccacaacaacagtg 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18100533 attagagtacatttgtaataacagaataaaggcataaagtttattctctcatttcttttccatttttcattattttatagcaacgaccacaacaacaatg 18100434  T
Q  559 -ttcagtgaaaccttatccaaaaattt 584  Q
     ||||||||||||||||||||||||||    
T  18100433 attcagtgaaaccttatccaaaaattt 18100407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 18116480 - 18116290
Alignment:
Q  97 tttggaaatcttttggagatacttcaaatgaatgtttgagatctctccaacgaattttcaaacatgcactgaatcatgattttctgattttaaggcattt 196  Q
    ||||||||||| |||||||||||||||||| || |||||  |||||| || |||||||||||||||| ||||||||||||||||| ||| |||||||||     
T  18116480 tttggaaatctattggagatacttcaaatgtatctttgaagtctctctaatgaattttcaaacatgcgctgaatcatgattttctaattataaggcatta 18116381  T
Q  197 gatgttaaaaaagcaggttaatccaaattaatgattagggaagacgatgggtttaaattaaaatgaggtcctaaacctactatatactgtga 288  Q
    |||||||||| ||  ||||||||||||| |||||||||| ||||  |||| ||| ||||||||| ||||||||||||||||||| |||||||    
T  18116380 gatgttaaaatagtgggttaatccaaatcaatgattaggaaagattatggattt-aattaaaatcaggtcctaaacctactatacactgtga 18116290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 459 - 545
Target Start/End: Complemental strand, 18085672 - 18085586
Alignment:
Q  459 attagagtacatttgtaataacagaataaaggcataaagtttattctctcatttcttttccatttttcattattttatagcaacgac 545  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  18085672 attagagtatatttgtaattacagaataaaggcataacatttattctctcatttcttttccaattttcattatttcatagcaacgac 18085586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 18085801 - 18085744
Alignment:
Q  330 caacaaatacgaaaagagctgacaaaatgtctacgacataacagcagaaaagattgtg 387  Q
    ||||||||||  ||||||||||||||||||| |||||| ||||||| |||||||||||    
T  18085801 caacaaatacataaagagctgacaaaatgtccacgacagaacagcaaaaaagattgtg 18085744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Complemental strand, 18116251 - 18116212
Alignment:
Q  505 tctcatttcttttccatttttcattattttatagcaacga 544  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  18116251 tctcatttcctttccatttttcattatattatagcaacga 18116212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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