View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11887_low_6 (Length: 516)
Name: NF11887_low_6
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 3545067 - 3544586
Alignment:
| Q |
18 |
catcatgcatcaaaaagaaccacacaagactgaatctagattttgagaagagagacttttcatcagttgagggaaaacattgacaaaacagttgaacaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545067 |
catcatgcatcaaaaagaaccacacaagactgaatctagattttgagaagagagacttttcatcagttgagggaaaacattgacaaaacagttgaacaag |
3544968 |
T |
|
| Q |
118 |
tacaacagaccgatttaaggagtttctgcagtttgatggcttgaggcaaagcgattaaccaaagcgagtgtgttgctggtaacttgagcaacattgacaa |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3544967 |
tacaacagaacgatttaaggagtttctgcagttcgatggcttgaggcaaagcgattaaccaaagcgagtgtgttgctggtaacttgagcaacattgacaa |
3544868 |
T |
|
| Q |
218 |
ccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatcatcagtaagtgcagcactgacccaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3544867 |
ccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatcatcagtaagtgcagcactgacccaagt |
3544768 |
T |
|
| Q |
318 |
ctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgattggctaagactgtccaaactgtcaccc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3544767 |
ctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgattggctaagactgtccaaactgtcaccc |
3544668 |
T |
|
| Q |
418 |
atgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgatatcttctttacaaatgatg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3544667 |
atgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgatatcttctttacaaacgatg |
3544586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University