View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_7 (Length: 472)
Name: NF11887_low_7
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 49041013 - 49041467
Alignment:
| Q |
1 |
gggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgacgggcaagtcgcgcacggccttccacacggcgctgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49041013 |
gggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgacgggcaagtcacgcacggccttccacacggcgctgt |
49041112 |
T |
|
| Q |
101 |
tacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041113 |
tacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaacccggccctttgcctcagtataagccagttcataccatagagaact |
49041212 |
T |
|
| Q |
201 |
gcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagctctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041213 |
gcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagctctt |
49041312 |
T |
|
| Q |
301 |
ccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacctgaacctttcagcaacttccttctaaccaaagaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041313 |
ccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacctgaacctttcagcaacttccttctaaccaaagaaa |
49041412 |
T |
|
| Q |
401 |
caaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttat |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041413 |
caaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttat |
49041467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 31333916 - 31333842
Alignment:
| Q |
282 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
356 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| ||||||||||| ||||||| |||||||| || |||||||| |
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| T |
31333916 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataagg |
31333842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 343
Target Start/End: Complemental strand, 49040316 - 49040059
Alignment:
| Q |
86 |
tccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttc |
185 |
Q |
| |
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|||| ||||| |||||||| |||||||| | |||||||||||||||||| |||| |||||| |||| ||| || ||||| ||||| || || | || |
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| T |
49040316 |
tccatacggcactgttacatttaaaacctgccccaaatgcaatctgccacaccctatccccctttgaaactctacccttggcctctacgtatgctaactc |
49040217 |
T |
|
| Q |
186 |
ataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactca |
285 |
Q |
| |
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|||||| || ||||| ||||||||||| ||||| | ||| | || | ||| || ||||||||||||||||| |||| | ||| ||||||| || |
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| T |
49040216 |
ataccaaagtgaactacttgaagtgttaccaaagcgatgtaatgtggaacaagatggctccatatgccactcacttagttctatattattctgcatagca |
49040117 |
T |
|
| Q |
286 |
tcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaat |
343 |
Q |
| |
|
|| | || | ||| ||||| ||||| || |||||||| |||||||| |||||||||| |
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|
| T |
49040116 |
tccaacactgatctcccacctgcatggatgcagaaatgctcaaaagccaatttgaaat |
49040059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 100 - 344
Target Start/End: Complemental strand, 15239692 - 15239448
Alignment:
| Q |
100 |
ttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaac |
199 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| | ||| |||||| || ||| || || || ||||||||||||| ||||||||| | |||| |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaac |
15239593 |
T |
|
| Q |
200 |
tgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagctct |
299 |
Q |
| |
|
| || |||||||| |||||||||| ||| ||||||| || |||||||||||||| ||||| | | |||||| |||| ||||||||| | ||||||||| |
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|
| T |
15239592 |
tactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcatccaaaacagctct |
15239493 |
T |
|
| Q |
300 |
tccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
344 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
15239492 |
tccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
15239448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 87 - 344
Target Start/End: Complemental strand, 34053404 - 34053147
Alignment:
| Q |
87 |
ccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttca |
186 |
Q |
| |
|
|||||| || |||||||| ||||| || || ||||||||||| ||||| || ||| |||||| || ||| || || || ||||||||||||| |||| |
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|
| T |
34053404 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattca |
34053305 |
T |
|
| Q |
187 |
taccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcat |
286 |
Q |
| |
|
||||||| ||||| || ||||| || |||||||||| || ||||| | || |||||||||||||| ||||| || | |||||| |||| || |||| |
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| T |
34053304 |
taccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcactaaggtcaagatttttctctaattcat |
34053205 |
T |
|
| Q |
287 |
caagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
344 |
Q |
| |
|
| | ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
34053204 |
ccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
34053147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 50087288 - 50087384
Alignment:
| Q |
264 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
360 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
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|
| T |
50087288 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
50087384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 23499272 - 23499346
Alignment:
| Q |
282 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
356 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
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|
| T |
23499272 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatctggaatataagg |
23499346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 23271550 - 23271646
Alignment:
| Q |
265 |
tgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttca |
361 |
Q |
| |
|
|||||||||||||| |||||||| | || || | |||||||||||||||||| ||||| ||||| ||| ||||||||| || |||||||| |||| |
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|
| T |
23271550 |
tgaagattcttctgtaactcatcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttca |
23271646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 26453392 - 26453318
Alignment:
| Q |
282 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
356 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |||||||| | || ||||| ||||||||||| |
|
|
| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatataagg |
26453318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 46572703 - 46572635
Alignment:
| Q |
291 |
aacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggttt |
359 |
Q |
| |
|
||||||||| || || ||||| || || |||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
46572703 |
aacagctctacctccggcatggatgcaaaaatgttcaaaagctagcttgaaatcaggaatataaggttt |
46572635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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