View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_8 (Length: 452)
Name: NF11887_low_8
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 2107265 - 2106844
Alignment:
| Q |
18 |
ctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107265 |
ctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagt |
2107166 |
T |
|
| Q |
118 |
tgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107165 |
tgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaagacttgtaaccatttgtattttgacagtaaaaaataattaaacagtctta |
2107066 |
T |
|
| Q |
218 |
tttagcagaagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107065 |
tttagcagaagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaa |
2106966 |
T |
|
| Q |
318 |
acataatagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2106965 |
acataatagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttc |
2106866 |
T |
|
| Q |
418 |
cttaaataagcattgttgatgt |
439 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2106865 |
cttaaataagcattgttgatgt |
2106844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 226 - 439
Target Start/End: Complemental strand, 2098577 - 2098386
Alignment:
| Q |
226 |
aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataata |
325 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
2098577 |
aagataaagtatgatcaaggtgattcctaaattccaatctagatgtttccaacttcacaaagcaatgctcaattgagaaaggagcaacttaa-------- |
2098486 |
T |
|
| Q |
326 |
gaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata |
425 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2098485 |
--------------ataaataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatg |
2098400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 2099107 - 2098956
Alignment:
| Q |
18 |
ctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagt |
117 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||| || |||||||||| || |
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| T |
2099107 |
ctaacctccgagaaagatggcccgatttgcttgagcatcagcttcagtgttatgttccttcaacattttcaaaagaaaaaacacggcatttgttaacggt |
2099008 |
T |
|
| Q |
118 |
tgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaaga |
169 |
Q |
| |
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| ||||||| ||||||||||||||| ||| ||||||| |||||||| |||| |
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| T |
2099007 |
tagggtaaaaatataaagacttgtaagctagaattgaagagattgtttaaga |
2098956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 2083270 - 2083207
Alignment:
| Q |
226 |
aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagca |
289 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||||| |
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| T |
2083270 |
aagaaaaagtatgatcaaaatgattctcaaataccaatgtaattgttttcaactccacaaagca |
2083207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 423
Target Start/End: Complemental strand, 2048359 - 2048176
Alignment:
| Q |
238 |
gatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgct |
337 |
Q |
| |
|
|||||||||||| | ||||| |||| |||| ||||||||| ||||||||||| || | || ||| || ||||||||||||| |||| || ||| || |
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| T |
2048359 |
gatcaaaatgattcacaaataccaaagtaataattttcaactccacaaagcagtactaagtttagagag-ggcaacttaaacattatag-accaataact |
2048262 |
T |
|
| Q |
338 |
aaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa |
423 |
Q |
| |
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||||| ||||||||||||||| || || ||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
2048261 |
aaataaataccctaggaatgtgttgaatctggagtgagtgaaagttatctgctagctccaaagcctcatcgcataagttccttaaa |
2048176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 2048969 - 2048918
Alignment:
| Q |
34 |
atggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattt |
85 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| |||||||||| |||| |
|
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| T |
2048969 |
atggcccggtttgcttgagcatcagcttcagtgttacattccttaaatattt |
2048918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 2055088 - 2055022
Alignment:
| Q |
18 |
ctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacatt |
84 |
Q |
| |
|
|||||||| |||| ||| ||||| |||||||| ||||||||| ||| |||| |||||||||||||| |
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| T |
2055088 |
ctaacctcgaagattgatagcccggtttgcttgagcatcagctccagtgttaaattccttaaacatt |
2055022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 2063076 - 2063010
Alignment:
| Q |
18 |
ctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacatt |
84 |
Q |
| |
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|||||| | |||| |||| ||||| |||||||| |||| | |||||| ||||||||||||||||||| |
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| T |
2063076 |
ctaaccacgaagatagatagcccggtttgcttgagcattaacttcagtgttatattccttaaacatt |
2063010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 2054498 - 2054417
Alignment:
| Q |
344 |
ataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata |
425 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| | ||| | |||| ||||||||||||||| ||||||| |||||| |
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|
| T |
2054498 |
ataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaata |
2054417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 2059237 - 2059196
Alignment:
| Q |
43 |
tttgcttgtgcatcagcttcagcgttatattccttaaacatt |
84 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| ||||| |
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| T |
2059237 |
tttgcttgagcattagcttcagcgttatattccttacacatt |
2059196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 2088931 - 2088795
Alignment:
| Q |
21 |
acctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacatggtatttgttaacagttga |
120 |
Q |
| |
|
|||||| ||| ||| |||| | |||||||| ||||||||||||| |||| ||||||||||| || |||| || ||||||| |||||||| ||| ||| |
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| T |
2088931 |
acctccgagatagacggcctggtttgcttgagcatcagcttcagtgttaagttccttaaacaattacaaagga--aaacatgttatttgtttaca-atga |
2088835 |
T |
|
| Q |
121 |
ggtaaaagtataaagacttgtaatctataattgaaaagat |
160 |
Q |
| |
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| |||| ||||| || ||||| |||| ||||||| |||| |
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|
| T |
2088834 |
gataaatatataaggagttgtattctaaaattgaagagat |
2088795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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