View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11887_low_9 (Length: 440)
Name: NF11887_low_9
Description: NF11887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11887_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 235 - 430
Target Start/End: Complemental strand, 18987543 - 18987344
Alignment:
| Q |
235 |
ttttcacattacacttatgctcacaaaaacgtcattttcgttgagaacctcttttt-tcggggtcaactgtctgtccctgtcgtgaaacaaaaacggtca |
333 |
Q |
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| T |
18987543 |
ttttcacagtacacttacgctcacaaaaacgtcattttcgttgagaacctctttttgtcggggtcaactgtctgtccctgtcgtgaaacaaaaagggtca |
18987444 |
T |
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| Q |
334 |
atggaatctctattgcatcaacatca---tcatgcactcattagttcagtaccaaccaaacccactttgcatgttccgtccaaacccaccatttttcttc |
430 |
Q |
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| T |
18987443 |
atggaatctctattgcatcaacatcatcatcatgcactcattagttcagtaccaaccaaacccacttcgcatgttccttccaaacccaccatttttcttc |
18987344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 18987744 - 18987630
Alignment:
| Q |
112 |
gttgaatttatcttaacgaacactttaaaatatcaccttttttatgtagaagtcctaactcaactgacaaata-------ttcaaattgcaaggctgaac |
204 |
Q |
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| T |
18987744 |
gttgaatttatcttaatgaacactttaaaatatcagatttttt-tatagaagttctaactcaactgacaaatacttaaaccttaaattgtaaggctgaac |
18987646 |
T |
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| Q |
205 |
atcgtgactcagtttc |
220 |
Q |
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| T |
18987645 |
atcgtaactcagtttc |
18987630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 24619204 - 24619150
Alignment:
| Q |
158 |
tagaagtcctaactcaactgacaaatattcaaattgcaaggctgaacatcgtgac |
212 |
Q |
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| T |
24619204 |
tagaagtcctaactcaactgacaaatgtcaaaattgtaaggccgaacgtcgtgac |
24619150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 27737992 - 27737955
Alignment:
| Q |
161 |
aagtcctaactcaactgacaaatattcaaattgcaagg |
198 |
Q |
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| T |
27737992 |
aagtcctaactcaactgacaaatatcaaaattgcaagg |
27737955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 32606455 - 32606390
Alignment:
| Q |
158 |
tagaagtcctaactcaactgacaaatattcaaattgcaaggctgaacatcgtgactcagtttcgaa |
223 |
Q |
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| T |
32606455 |
tagaagttctaactcaactgacaaataccgaaattgcaaggccggacgtcgtgacccaggttcgaa |
32606390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 28458666 - 28458707
Alignment:
| Q |
158 |
tagaagtcctaactcaactgacaaatattcaaattgcaaggc |
199 |
Q |
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| T |
28458666 |
tagaagtcctaactcaactgacaaatgtcgaaattgcaaggc |
28458707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 11688266 - 11688335
Alignment:
| Q |
158 |
tagaagtcctaactcaactgacaaatattcaaattgcaaggctgaacatcgtgactcagtttcgaattca |
227 |
Q |
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||||||||||| |||||||||||||||| |||||||||| | |||| | ||||| | | |||||||||| |
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| T |
11688266 |
tagaagtcctagctcaactgacaaatatcgaaattgcaagcccgaacgttgtgaccctggttcgaattca |
11688335 |
T |
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