View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_high_15 (Length: 475)

Name: NF11888_high_15
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_high_15
NF11888_high_15
[»] chr2 (3 HSPs)
chr2 (1-456)||(35536939-35537394)
chr2 (1-456)||(35529467-35529914)
chr2 (1-454)||(35577204-35577652)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 35536939 - 35537394
Alignment:
Q  1 acaatcagaaaagatgaaagtcgttaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagaaacttcagctccatc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35536939 acaatcagaaaagatgaaagccgttaaaaaaggtaaagcaaaacc-atctttaaccgaagctacctttccgtgagaatagtaagaaacttcagctccatc 35537037  T
Q  101 tggtaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctgatgaaactag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35537038 tggtaacacgtcttcttcaaataccaacttatgcaaccgtacatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctgatgaaactag 35537137  T
Q  201 aacgccgtgtgttaatgcnnnnnnnnnnnnnnnnncatctaaatcagtaaattctaa-nnnnnnnnnnnncaaatgtgttaagtgtttaagaatcatact 299  Q
    ||||||||||||||||||                 ||||||||||||||||||||||             ||||||||||||||||||||||||||||||    
T  35537138 aacgccgtgtgttaatgcatataatatataatatacatctaaatcagtaaattctaatttttttttttttcaaatgtgttaagtgtttaagaatcatact 35537237  T
Q  300 tctttccagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattaatcaatgcctttggaatcatatttgtggctgatgtctctcg 399  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35537238 tctttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggctgatgtctctcg 35537337  T
Q  400 aatcatatttgtgtttgatgagtttggaaccaccatctcagtgttcgatgacttctg 456  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35537338 aaccatatttgtgtttgatgactttggaaccaccatctcagtgttcgatgacttctg 35537394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 35529467 - 35529914
Alignment:
Q  1 acaatcagaaaagatgaaagtcgttaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagaaacttcagctccatc 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35529467 acaatcagaaaagattaaagtcattaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagcaacttcagctccatc 35529566  T
Q  101 tggtaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctgatgaaactag 200  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||| |||||| | |||||    
T  35529567 tagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctgataacactag 35529666  T
Q  201 aacgccgtgtgttaatgcnnnnnnnnnnnnnnnnncatctaaatcagtaaattctaannnnnnnnnnnncaaatgtgttaagtgtttaagaatcatactt 300  Q
    ||| ||||||||||||||                 |||||||||||||||||||||             ||||||||||||||| |||||||||||||||    
T  35529667 aacaccgtgtgttaatgc-------atataatatacatctaaatcagtaaattcta--tttttttttttcaaatgtgttaagtgcttaagaatcatactt 35529757  T
Q  301 -ctttccagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattaatcaatgcctttggaatcatatttgtggctgatgtctctcg 399  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35529758 actttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggctgatgtctctcg 35529857  T
Q  400 aatcatatttgtgtttgatgagtttggaaccaccatctcagtgttcgatgacttctg 456  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35529858 aaccatatttgtgtttgatgactttggaaccaccatctcagtgttcgatgacttctg 35529914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 35577204 - 35577652
Alignment:
Q  1 acaatcagaaaagatgaaagtcgttaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagaaacttcagctccatc 100  Q
    |||||||||||||||||||||| | ||| |||||||| |  ||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||    
T  35577204 acaatcagaaaagatgaaagtcataaaacaaggtaaaactgaacccatctttaaccaaagctacctttccatgagaatagtaagcaacttcagttccatc 35577303  T
Q  101 tggtaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctgatgaaactag 200  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||| |||| |||||||||    
T  35577304 ttctaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggttcaagaaaaagagcaaaatttaaattcctggtgaaactag 35577403  T
Q  201 aacgccgtg---tgttaatgcnnnnnnnnnnnnnnnnncatctaaatcagtaaattctaannnnnnnnnnnncaaatgtgttaagtgtttaagaatcata 297  Q
    ||||| |||   |||||||||                 ||||||||||||||||||||||            ||||| | ||||||| |||| |  ||||    
T  35577404 aacgctgtgtgttgttaatgcatataatatataatatacatctaaatcagtaaattctaatttttttttc--caaatatattaagtgcttaaaagacata 35577501  T
Q  298 cttctttccagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattaatcaatgcctttggaatcatatttgtggctgatgtctct 397  Q
    |||   || ||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  35577502 ctt---tctagttatttttccccgactcttgcc---agatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggatgatgtctct 35577595  T
Q  398 cgaatcatatttgtgtttgatgagtttggaaccaccatctcagtgttcgatgacttc 454  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35577596 cgaaccatatttgtgtttgatgaatttggaaccaccatctcagtgtttgatgacttc 35577652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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